It's really just the command "tox -e docker-ubuntu-groovy-standard-arm64v8" - try it
On Tuesday, November 2, 2021 at 8:37:54 PM UTC-7 William Stein wrote: > What did you do exactly? For example did you install tachyon systemwide? > > > Thanks! > > On Tue, Nov 2, 2021 at 8:02 PM Matthias Köppe <[email protected]> > wrote: > >> I just built for this architecture successfully using "tox -e >> docker-ubuntu-groovy-standard-arm64v8" (on my Intel MBP). That's slightly >> newer than ubuntu-focal (20.04) >> >> sage -t --random-seed=0 >> src/sage/algebras/quatalg/quaternion_algebra_cython.pyx >> [10 tests, 0.17 s] >> >> ---------------------------------------------------------------------- >> >> All tests passed! >> >> >> >> >> On Tuesday, November 2, 2021 at 9:13:25 AM UTC-7 William Stein wrote: >> >>> This is a quick update about building the 9.5.beta5 version of Sage on >>> an M1 Mac under Docker aarch64 Linux. >>> >>> After installing Tachyon system wide, the build completes. This Cython >>> module won't import due to an issue with libgomp, which >>> is evidently some openMP parallel computing library, failing with >>> " /lib/aarch64-linux-gnu/libgomp.so.1: cannot allocate memory in static TLS >>> block". >>> See below for the failed test. >>> >>> A quick search reveals this discussion of exactly this sort of problem: >>> >>> https://github.com/opencv/opencv/issues/14884 >>> >>> It sounds like a bug in how SageMath is built (or the library is >>> imported) that will need a workaround on aarch64. This comment >>> >>> https://github.com/opencv/opencv/issues/14884#issuecomment-815632861 >>> >>> seems most actionable. >>> >>> I was NOT able to reproduce this by just starting sage or Python and >>> importing modules. It has something to >>> do with how doctests are run. >>> >>> The suggestion in the github issue I link to above to use LD_PRELOAD >>> *does* work, i.e., >>> >>> LD_PRELOAD=/lib/aarch64-linux-gnu/libgomp.so.1 ./sage -t >>> src/sage/algebras/quatalg/quaternion_algebra_cython.pyx >>> ... >>> works fine. I might just set LD_PRELOAD for cocalc-docker if nobody has >>> a better idea. I'm keeping track of all these >>> issues with Sage + aarch64 here: >>> https://github.com/sagemathinc/cocalc-docker/issues/138 >>> >>> --- >>> >>> root@8bff70fbbc1c:/usr/local/sage# ./sage -t >>> src/sage/algebras/quatalg/quaternion_algebra_cython.pyx >>> no stored timings available >>> Running doctests with ID 2021-11-02-15-54-57-8a128eb1. >>> Git branch: HEAD >>> Using >>> --optional=build,debian,dochtml,pip,sage,sage.geometry.polyhedron,sage.rings.real_double,sage_spkg >>> Doctesting 1 file. >>> Traceback (most recent call last): >>> File "/usr/local/sage/src/bin/sage-runtests", line 151, in <module> >>> err = DC.run() >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/doctest/control.py", >>> >>> line 1254, in run >>> self.run_doctests() >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/doctest/control.py", >>> >>> line 951, in run_doctests >>> self.dispatcher = DocTestDispatcher(self) >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/doctest/forker.py", >>> >>> line 1614, in __init__ >>> init_sage(controller) >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/doctest/forker.py", >>> >>> line 192, in init_sage >>> controller.load_environment() >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/doctest/control.py", >>> >>> line 572, in load_environment >>> return import_module(self.options.environment) >>> File "/usr/lib/python3.8/importlib/__init__.py", line 127, in >>> import_module >>> return _bootstrap._gcd_import(name[level:], package, level) >>> File "<frozen importlib._bootstrap>", line 1014, in _gcd_import >>> File "<frozen importlib._bootstrap>", line 991, in _find_and_load >>> File "<frozen importlib._bootstrap>", line 975, in >>> _find_and_load_unlocked >>> File "<frozen importlib._bootstrap>", line 671, in _load_unlocked >>> File "<frozen importlib._bootstrap_external>", line 848, in exec_module >>> File "<frozen importlib._bootstrap>", line 219, in >>> _call_with_frames_removed >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/repl/ipython_kernel/all_jupyter.py", >>> >>> line 5, in <module> >>> from sage.all_cmdline import * >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/all_cmdline.py", >>> >>> line 19, in <module> >>> from sage.all import * >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/all.py", >>> >>> line 129, in <module> >>> from sage.algebras.all import * >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/algebras/all.py", >>> >>> line 21, in <module> >>> import sage.algebras.catalog as algebras >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/algebras/catalog.py", >>> >>> line 80, in <module> >>> from sage.algebras.quatalg.quaternion_algebra import >>> QuaternionAlgebra as Quaternion >>> File >>> "/usr/local/sage/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/sage/algebras/quatalg/quaternion_algebra.py", >>> >>> line 69, in <module> >>> from . import quaternion_algebra_cython >>> File "sage/algebras/quatalg/quaternion_algebra_cython.pyx", line 1, in >>> init sage.algebras.quatalg.quaternion_algebra_cython >>> (build/cythonized/sage/algebras/quatalg/quaternion_algebra_cython.cpp:6215) >>> File "sage/matrix/matrix_integer_dense.pyx", line 1, in init >>> sage.matrix.matrix_integer_dense >>> (build/cythonized/sage/matrix/matrix_integer_dense.cpp:57704) >>> ImportError: /lib/aarch64-linux-gnu/libgomp.so.1: cannot allocate memory >>> in static TLS block >>> >>> On Mon, Nov 1, 2021 at 5:33 PM William Stein <[email protected]> wrote: >>> >>>> >>>> >>>> On Mon, Nov 1, 2021 at 4:35 PM Dima Pasechnik <[email protected]> wrote: >>>> >>>>> >>>>> >>>>> On Mon, Nov 1, 2021 at 11:28 PM William Stein <[email protected]> >>>>> wrote: >>>>> >>>>>> Great idea. Thanks Dima! >>>>>> >>>>>> On Mon, Nov 1, 2021 at 3:37 PM Dima Pasechnik <[email protected]> >>>>>> wrote: >>>>>> >>>>> >>>>>>> >>>>>>> On Mon, Nov 1, 2021 at 10:18 PM William Stein <[email protected]> >>>>>>> wrote: >>>>>>> >>>>>>>> I tried to build sage-9.5.beta5 on a very clean Linux Ubuntu:20.04 >>>>>>>> image with standard dev packages (in Docker) but on an ARM aarch64 >>>>>>>> architecture instead of Intel. It fails with Tachyon simply saying >>>>>>>> "Error: >>>>>>>> Sorry, your platform isn't supported by Tachyon and/or Sage. >>>>>>>> Exiting...". >>>>>>>> I don't know what that is about. >>>>>>>> >>>>>>> I found https://trac.sagemath.org/ticket/23712 which is a 2-year >>>>>>>> old ticket about how upgrading Tachyon is needed " to make Sage >>>>>>>> work on arm64/aarch64." >>>>>>>> >>>>>>>> Any suggestions? My goal is to make an aarch64 version of the >>>>>>>> cocalc-docker image. Is there an easy workaround for this problem, >>>>>>>> or >>>>>>>> should I just do some hack to disable building tachyon (since it is a >>>>>>>> runtime only dependency)? Is the right way to disable building a >>>>>>>> standard >>>>>>>> package these days still to touch some file somewhere, or did that >>>>>>>> change? >>>>>>>> >>>>>>> >>>>> by the way, it would be great to know if our usual "install as many >>>>> system packages as ./configure advises >>>>> at the end" scheme works well on aarch64, don't stop at tachyon please. >>>>> >>>> >>>> Good idea, definitely. >>>> >>>> Is there an official Dockerfile for building Sage these days >>>> somewhere? I'm using one that I found years ago from @ebray, and all >>>> that advertisement about the fantastic support for system-wide packages >>>> (which I forgot about) is hidden behind automation. [searches...]. Yes, >>>> there is: >>>> >>>> https://github.com/sagemath/sage/blob/develop/docker/Dockerfile >>>> >>>> That's a pretty enormous Dockerfile, and I imagine it solves many >>>> subtle problems. A cursory glance suggests that it installs a minimal >>>> collection of system-wide packages. Maybe somebody should try what you >>>> just suggested (modify it to depend on system packages) starting with that >>>> Dockerfile too, to see how it goes (or as a different CI test)... >>>> >>>> William >>>> >>>> >>>> >>>> >>> >>>>> >>>>> >>>>>>> Just install the system tachyon package, and let ./configure do its >>>>>>> job. >>>>>>> You don't need to build it. >>>>>>> >>>>>>> >>>>>> >>>>>>>> gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) >>>>>>>> **************************************************** >>>>>>>> Package 'tachyon' is currently not installed >>>>>>>> No legacy uninstaller found for 'tachyon'; nothing to do >>>>>>>> >>>>>>>> **************************************************************************************** >>>>>>>> Error: Sorry, your platform isn't supported by Tachyon and/or Sage. >>>>>>>> Exiting... >>>>>>>> >>>>>>>> **************************************************************************************** >>>>>>>> >>>>>>>> real 0m0.013s >>>>>>>> user 0m0.007s >>>>>>>> sys 0m0.009s >>>>>>>> >>>>>>>> ************************************************************************ >>>>>>>> Error installing package tachyon-0.98.9.p7 >>>>>>>> >>>>>>>> ************************************************************************ >>>>>>>> Please email sage-devel (http://groups.google.com/group/sage-devel) >>>>>>>> explaining the problem and including the log files >>>>>>>> /usr/local/sage/logs/pkgs/tachyon-0.98.9.p7.log >>>>>>>> and >>>>>>>> /usr/local/sage/config.log >>>>>>>> Describe your computer, operating system, etc. >>>>>>>> If you want to try to fix the problem yourself, *don't* just cd to >>>>>>>> /usr/local/sage/local/var/tmp/sage/build/tachyon-0.98.9.p7 and type >>>>>>>> 'make' or whatever is appropriate. >>>>>>>> Instead, the following commands setup all environment variables >>>>>>>> correctly and load a subshell for you to debug the error: >>>>>>>> (cd '/usr/local/sage/local/var/tmp/sage/build/tachyon-0.98.9.p7' >>>>>>>> && '/usr/local/sage/sage' --buildsh) >>>>>>>> When you are done debugging, you can type "exit" to leave the >>>>>>>> subshell. >>>>>>>> >>>>>>>> ************************************************************************ >>>>>>>> >>>>>>>> On Sat, Oct 30, 2021 at 2:54 PM Samuel Lelievre < >>>>>>>> [email protected]> wrote: >>>>>>>> >>>>>>> 2021-10-30 18:34:21 UTC, Emmanuel Charpentier: >>>>>>>>> > >>>>>>>>> > After rebuilding and reinstalling the same (really) >>>>>>>>> > optional packages, `ptestlong` gets exactly one >>>>>>>>> > (reproducible) failure, i. e. the one reported by >>>>>>>>> > Samuel Lelièvre. >>>>>>>>> > >>>>>>>>> > I am at loss as to why I needed to rebuild 9.5 >>>>>>>>> > from sratch instead of upgrading from 9.3. Ideas? >>>>>>>>> >>>>>>>>> I'm sure you mean: "why I needed to rebuild 9.5.beta5 >>>>>>>>> from scratch instead of upgrading from 9.5.beta3". >>>>>>>>> >>>>>>>>> Not sure why a distclean was needed in that case. >>>>>>>>> >>>>>>>>> -- >>>>>>>>> You received this message because you are subscribed to the Google >>>>>>>>> Groups "sage-release" group. >>>>>>>>> >>>>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>>>>> send an email to [email protected]. >>>>>>>>> To view this discussion on the web visit >>>>>>>>> https://groups.google.com/d/msgid/sage-release/422c4441-dfb2-4b97-85d6-7f706a2be402n%40googlegroups.com >>>>>>>>> >>>>>>>>> <https://groups.google.com/d/msgid/sage-release/422c4441-dfb2-4b97-85d6-7f706a2be402n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>>>>>> . >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> -- >>>>>>>> William (http://wstein.org) >>>>>>>> >>>>>>>> -- >>>>>>>> You received this message because you are subscribed to the Google >>>>>>>> Groups "sage-release" group. >>>>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>>>> send an email to [email protected]. >>>>>>>> To view this discussion on the web visit >>>>>>>> https://groups.google.com/d/msgid/sage-release/CACLE5GBVsNZbe%2BnikwGR-uxsL8WWVSk1EzEqziR--DT-ERTs_A%40mail.gmail.com >>>>>>>> >>>>>>>> <https://groups.google.com/d/msgid/sage-release/CACLE5GBVsNZbe%2BnikwGR-uxsL8WWVSk1EzEqziR--DT-ERTs_A%40mail.gmail.com?utm_medium=email&utm_source=footer> >>>>>>>> . >>>>>>>> >>>>>>> -- >>>>>>> You received this message because you are subscribed to the Google >>>>>>> Groups "sage-release" group. >>>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>>> send an email to [email protected]. >>>>>>> To view this discussion on the web visit >>>>>>> https://groups.google.com/d/msgid/sage-release/CAAWYfq3FDgxH_UOcEhMY1wvbLkvEPkMhjchtPMDJ1X6YzG7DmQ%40mail.gmail.com >>>>>>> >>>>>>> <https://groups.google.com/d/msgid/sage-release/CAAWYfq3FDgxH_UOcEhMY1wvbLkvEPkMhjchtPMDJ1X6YzG7DmQ%40mail.gmail.com?utm_medium=email&utm_source=footer> >>>>>>> . >>>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> William (http://wstein.org) >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "sage-release" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to [email protected]. >>>>>> To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/sage-release/CACLE5GAHQpnqrfC74jimwXA-UXU4j%2BLSE98tvW2%3DyMQ%2BC05okw%40mail.gmail.com >>>>>> >>>>>> <https://groups.google.com/d/msgid/sage-release/CACLE5GAHQpnqrfC74jimwXA-UXU4j%2BLSE98tvW2%3DyMQ%2BC05okw%40mail.gmail.com?utm_medium=email&utm_source=footer> >>>>>> . >>>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "sage-release" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to [email protected]. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/sage-release/CAAWYfq3HSp6ZsRqWPQBSJPQU3%3DQa1owhk4tMGpa3j5Wsqxg3zQ%40mail.gmail.com >>>>> >>>>> <https://groups.google.com/d/msgid/sage-release/CAAWYfq3HSp6ZsRqWPQBSJPQU3%3DQa1owhk4tMGpa3j5Wsqxg3zQ%40mail.gmail.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>> >>>> >>>> -- >>>> William (http://wstein.org) >>>> >>> >>> >>> -- >>> William (http://wstein.org) >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-release" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/9497b1ce-756a-4605-973a-cc577ea65355n%40googlegroups.com >> >> <https://groups.google.com/d/msgid/sage-release/9497b1ce-756a-4605-973a-cc577ea65355n%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- > -- William Stein > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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