Regarding the iml build failure, could you run "otool -lL /usr/local/opt/openblas/lib/libopenblas.0.dylib " please
On Sunday, January 16, 2022 at 6:46:59 PM UTC-8 list...@gmail.com wrote: > > Yes, of course. > > I have restarted the whole process again (modifying and sourcing > .homebrew-build-env), and it does not go further than iml: > > * package: iml-1.0.4p1.p2 > > last build time: Jan 17 03:43 > > log file: > /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log > > build directory: > /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2 > On Mon, 17 Jan 2022 at 03:24, Matthias Köppe <matthia...@gmail.com> wrote: > >> Did you use ". .homebrew-build-env" before the latest build? >> >> On Sunday, January 16, 2022 at 5:30:12 PM UTC-8 list...@gmail.com wrote: >> >>> >>> Here is what I have done. >>> >>> $ brew uninstall openblas >>> >>> Error: Refusing to uninstall /opt/homebrew/Cellar/openblas/0.3.19 >>> >>> because it is required by arpack, cbc, cgl, clp, coinutils, igraph, osi, >>> r and suite-sparse, which are currently installed. >>> >>> You can override this and force removal with: >>> >>> brew uninstall --ignore-dependencies openblas >>> >>> $ brew uninstall --ignore-dependencies openblas >>> >>> Uninstalling /opt/homebrew/Cellar/openblas/0.3.19... (23 files, 51.9MB) >>> >>> $ brew install openblas >>> >>> ==> *Auto-updated Homebrew!* >>> >>> Updated 1 tap (homebrew/core). >>> >>> ==> *Updated Formulae* >>> >>> Updated 10 formulae. >>> >>> Running `brew update --preinstall`... >>> >>> >>> ==> *Downloading >>> https://ghcr.io/v2/homebrew/core/openblas/manifests/0.3.19 >>> <https://ghcr.io/v2/homebrew/core/openblas/manifests/0.3.19>* >>> >>> Already downloaded: >>> /Users/gms/Library/Caches/Homebrew/downloads/b47e3d834a9c52d0772b21372a675e3496a8480baa2f3e9b72d60def08682c3f--openblas-0.3.19.bottle_manifest.json >>> >>> ==> *Downloading >>> https://ghcr.io/v2/homebrew/core/openblas/blobs/sha256:33e6385102e69ddd716d8eb818861e2e2e2c08de20e06d189ffd69115131ed03 >>> >>> <https://ghcr.io/v2/homebrew/core/openblas/blobs/sha256:33e6385102e69ddd716d8eb818861e2e2e2c08de20e06d189ffd69115131ed03>* >>> >>> Already downloaded: >>> /Users/gms/Library/Caches/Homebrew/downloads/82003eb6c8dd0091f8465e8203b39d67e81d7db4c9e4d790e71f6b2e8445ab3f--openblas--0.3.19.arm64_big_sur.bottle.tar.gz >>> >>> ==> *Pouring openblas--0.3.19.arm64_big_sur.bottle.tar.gz* >>> >>> ==> *Caveats* >>> >>> openblas is keg-only, which means it was not symlinked into >>> /opt/homebrew, >>> >>> because macOS provides BLAS in Accelerate.framework. >>> >>> >>> For compilers to find openblas you may need to set: >>> >>> export LDFLAGS="-L/opt/homebrew/opt/openblas/lib" >>> >>> export CPPFLAGS="-I/opt/homebrew/opt/openblas/include" >>> >>> >>> For pkg-config to find openblas you may need to set: >>> >>> export PKG_CONFIG_PATH="/opt/homebrew/opt/openblas/lib/pkgconfig" >>> >>> >>> ==> *Summary* >>> >>> 🍺 /opt/homebrew/Cellar/openblas/0.3.19: 23 files, 51.9MB >>> >>> ==> *Running `brew cleanup openblas`...* >>> >>> Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP. >>> >>> Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`). >>> >>> $ >>> >>> then the modification for .homebrew-build-env, followed by make -k. >>> >>> And now the only remaining problem is openblas: >>> >>> * package: openblas-0.3.18 >>> >>> last build time: Jan 17 02:24 >>> >>> log file: >>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log >>> >>> build directory: >>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18 >>> >>> Logs attached (sorry for the wrong log before). The one for openblas is >>> zipped as it is too large. >>> >>> On Mon, 17 Jan 2022 at 00:34, Matthias Köppe <matthia...@gmail.com> >>> wrote: >>> >>>> Also worth checking whether "brew install openblas" installs something >>>> new >>>> (see messages at the end of the configure run) >>>> >>>> On Sunday, January 16, 2022 at 2:34:48 PM UTC-8 Matthias Köppe wrote: >>>> >>>>> There is no error in the zn_poly log file; but could you post the >>>>> openblas log file please? >>>>> >>>>> On Sunday, January 16, 2022 at 2:17:38 PM UTC-8 Matthias Köppe wrote: >>>>> >>>>>> Thanks for testing and posting the logs. I'll dissect the logs at >>>>>> https://trac.sagemath.org/ticket/30592 >>>>>> >>>>>> >>>>>> On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com >>>>>> wrote: >>>>>> >>>>>>> >>>>>>> I started afresh (delete sage-9.5.rc1, untar, etc.) >>>>>>> >>>>>>> make -k gives >>>>>>> >>>>>>> The following package(s) may have failed to build (not necessarily >>>>>>> >>>>>>> during this run of 'make tachyon'): >>>>>>> >>>>>>> >>>>>>> * package: primecountpy-0.1.0 >>>>>>> >>>>>>> last build time: Jan 16 21:55 >>>>>>> >>>>>>> log file: >>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log >>>>>>> >>>>>>> >>>>>>> * package: libhomfly-1.02r6 >>>>>>> >>>>>>> last build time: Jan 16 21:55 >>>>>>> >>>>>>> log file: >>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/libhomfly-1.02r6.log >>>>>>> >>>>>>> build directory: >>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/libhomfly-1.02r6 >>>>>>> >>>>>>> >>>>>>> * package: m4ri-20200115 >>>>>>> >>>>>>> last build time: Jan 16 21:55 >>>>>>> >>>>>>> log file: >>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/m4ri-20200115.log >>>>>>> >>>>>>> build directory: >>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/m4ri-20200115 >>>>>>> >>>>>>> >>>>>>> * package: openblas-0.3.18 >>>>>>> >>>>>>> last build time: Jan 16 21:58 >>>>>>> >>>>>>> log file: >>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log >>>>>>> >>>>>>> build directory: >>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18 >>>>>>> >>>>>>> >>>>>>> * package: tachyon-0.98.9.p7 >>>>>>> >>>>>>> last build time: Jan 16 21:59 >>>>>>> >>>>>>> log file: >>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log >>>>>>> >>>>>>> build directory: >>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7 >>>>>>> >>>>>>> Logs attached. >>>>>>> >>>>>>> On Sun, 16 Jan 2022 at 18:25, G. M.-S. <list...@gmail.com> wrote: >>>>>>> >>>>>>>> >>>>>>>> Here it is. Before: >>>>>>>> >>>>>>>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/* >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 13933 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 14714 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 4726 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 4947 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 10953 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 11307 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 1373 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 609 Jan 16 11:08 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h >>>>>>>> >>>>>>>> $ >>>>>>>> and after make cddlib-clean cddlib: >>>>>>>> >>>>>>>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/* >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 13933 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 14714 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 4726 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 4947 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 10953 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 11307 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 1373 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h >>>>>>>> >>>>>>>> -rw-r--r-- 1 gms staff 609 Jan 16 18:21 >>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h >>>>>>>> >>>>>>>> $ >>>>>>>> >>>>>>>> Logs attached. >>>>>>>> >>>>>>>> Trying to make again, will report. >>>>>>>> >>>>>>>> On Sun, 16 Jan 2022 at 18:12, Matthias Köppe <matthia...@gmail.com> >>>>>>>> wrote: >>>>>>>> >>>>>>>>> From singular....log: >>>>>>>>> >>>>>>>>> In file included from bbfan.cc:17: >>>>>>>>> In file included from ./gfan.h:18: >>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h:26:10: >>>>>>>>> fatal error: 'cdd_f.h' file not found >>>>>>>>> #include "cdd_f.h" >>>>>>>>> ^~~~~~~~~ >>>>>>>>> 1 error generated. >>>>>>>>> make[10]: *** [gfanlib_la-bbfan.lo] Error 1 >>>>>>>>> >>>>>>>>> This is very strange. Could you (1) check what's in >>>>>>>>> local/include/cddlib/ and (2) reinstall cddlib using "make >>>>>>>>> cddlib-clean >>>>>>>>> cddlib"? >>>>>>>>> >>>>>>>>> >>>>>>>>> On Sunday, January 16, 2022 at 2:17:58 AM UTC-8 list...@gmail.com >>>>>>>>> wrote: >>>>>>>>> >>>>>>>>>> >>>>>>>>>> There was no /usr/local/opt. >>>>>>>>>> I eliminated all references to /usr/local/opt in .bash_profile. >>>>>>>>>> Uninstalled homebrew and reinstalled it. >>>>>>>>>> >>>>>>>>>> I get >>>>>>>>>> >>>>>>>>>> make[2]: *** [all-start] Error 2 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> real 4m27.295s >>>>>>>>>> >>>>>>>>>> user 12m14.754s >>>>>>>>>> >>>>>>>>>> sys 3m20.702s >>>>>>>>>> >>>>>>>>>> *************************************************************** >>>>>>>>>> >>>>>>>>>> Error building Sage. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> The following package(s) may have failed to build (not necessarily >>>>>>>>>> >>>>>>>>>> during this run of 'make all-start'): >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> * package: iml-1.0.4p1.p2 >>>>>>>>>> >>>>>>>>>> last build time: Jan 16 00:17 >>>>>>>>>> >>>>>>>>>> log file: >>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log >>>>>>>>>> >>>>>>>>>> build directory: >>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> * package: singular-4.2.1p3 >>>>>>>>>> >>>>>>>>>> last build time: Jan 16 00:18 >>>>>>>>>> >>>>>>>>>> log file: >>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log >>>>>>>>>> >>>>>>>>>> build directory: >>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> * package: tachyon-0.98.9.p7 >>>>>>>>>> >>>>>>>>>> last build time: Jan 16 11:08 >>>>>>>>>> >>>>>>>>>> log file: >>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log >>>>>>>>>> >>>>>>>>>> build directory: >>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> [...] >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> make[1]: *** [all-start] Error 1 >>>>>>>>>> >>>>>>>>>> make: *** [all] Error 2 >>>>>>>>>> >>>>>>>>>> Logs attached. >>>>>>>>>> >>>>>>>>>> On Sun, 16 Jan 2022 at 01:38, Matthias Köppe < >>>>>>>>>> matthia...@gmail.com> wrote: >>>>>>>>>> >>>>>>>>>>> It looks like you have homebrew installed both for x86_64 (in >>>>>>>>>>> /usr/local) and for arm64 (in /opt/homebrew). Could you check if >>>>>>>>>>> moving >>>>>>>>>>> /usr/local out of the way fixes the build errors? >>>>>>>>>>> >>>>>>>>>>> On Saturday, January 15, 2022 at 4:25:49 PM UTC-8 >>>>>>>>>>> list...@gmail.com wrote: >>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> Here it is. >>>>>>>>>>>> >>>>>>>>>>>> On Sun, 16 Jan 2022 at 01:23, Matthias Köppe < >>>>>>>>>>>> matthia...@gmail.com> wrote: >>>>>>>>>>>> >>>>>>>>>>>>> config.log please >>>>>>>>>>>>> >>>>>>>>>>>>> On Saturday, January 15, 2022 at 3:24:58 PM UTC-8 >>>>>>>>>>>>> list...@gmail.com wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> Trying to build on an M1 Mac under macOS 11.6.2, I get >>>>>>>>>>>>>> >>>>>>>>>>>>>> make[2]: *** [all-start] Error 2 >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> real 3m36.733s >>>>>>>>>>>>>> >>>>>>>>>>>>>> user 4m58.426s >>>>>>>>>>>>>> >>>>>>>>>>>>>> sys 1m2.949s >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> *************************************************************** >>>>>>>>>>>>>> >>>>>>>>>>>>>> Error building Sage. >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> The following package(s) may have failed to build (not >>>>>>>>>>>>>> necessarily >>>>>>>>>>>>>> >>>>>>>>>>>>>> during this run of 'make all-start'): >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> * package: zn_poly-0.9.2 >>>>>>>>>>>>>> >>>>>>>>>>>>>> last build time: Jan 16 00:17 >>>>>>>>>>>>>> >>>>>>>>>>>>>> log file: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/zn_poly-0.9.2.log >>>>>>>>>>>>>> >>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/zn_poly-0.9.2 >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> * package: ratpoints-2.1.3.p5 >>>>>>>>>>>>>> >>>>>>>>>>>>>> last build time: Jan 16 00:17 >>>>>>>>>>>>>> >>>>>>>>>>>>>> log file: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/ratpoints-2.1.3.p5.log >>>>>>>>>>>>>> >>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/ratpoints-2.1.3.p5 >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> * package: iml-1.0.4p1.p2 >>>>>>>>>>>>>> >>>>>>>>>>>>>> last build time: Jan 16 00:17 >>>>>>>>>>>>>> >>>>>>>>>>>>>> log file: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log >>>>>>>>>>>>>> >>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2 >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> * package: singular-4.2.1p3 >>>>>>>>>>>>>> >>>>>>>>>>>>>> last build time: Jan 16 00:18 >>>>>>>>>>>>>> >>>>>>>>>>>>>> log file: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log >>>>>>>>>>>>>> >>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3 >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> [...] >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> make[1]: *** [all-start] Error 1 >>>>>>>>>>>>>> >>>>>>>>>>>>>> make: *** [all] Error 2 >>>>>>>>>>>>>> >>>>>>>>>>>>>> Logs attached. >>>>>>>>>>>>>> >>>>>>>>>>>>>> HTH >>>>>>>>>>>>>> >>>>>>>>>>>>>> Guillermo >>>>>>>>>>>>>> >>>>>>>>>>>>>> On Sat, 15 Jan 2022 at 22:01, Matthias Köppe < >>>>>>>>>>>>>> matthia...@gmail.com> wrote: >>>>>>>>>>>>>> >>>>>>>>>>>>>>> Based on the runs on GH Actions, I have updated the summary >>>>>>>>>>>>>>> of platform support in >>>>>>>>>>>>>>> https://wiki.sagemath.org/ReleaseTours/sage-9.5#Sources >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> TL;DR: It's all good now on all platforms tested on GH >>>>>>>>>>>>>>> Actions, including Cygwin. >>>>>>>>>>>>>>> But I would urge that 9.5 still merge the positively reviews >>>>>>>>>>>>>>> tickets marked "critical"/"blocker", such as >>>>>>>>>>>>>>> https://trac.sagemath.org/ticket/29285 (which fixes the >>>>>>>>>>>>>>> build in the presence of pyenv). >>>>>>>>>>>>>>> Also *note we have absolutely no automatic testing for the >>>>>>>>>>>>>>> Apple Silicon (M1) platform.* So it would be good if >>>>>>>>>>>>>>> users/developers who have access to this platform test the >>>>>>>>>>>>>>> release >>>>>>>>>>>>>>> candidate. >>>>>>>>>>>>>>> >>>>>>>>>>>>>> > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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