In that particular case, because giac from the system is used, either the system giac is missing some dependencies or someone broke their system by removing libcliquer without removing nauty itself (which with apt may mean giving the wrong answer to a prompt explaining that you are about to break something). Unless the user explicitly broke their system, I’d say it is a bug in that distribution.
> On 28/04/2022, at 08:22, Matthias Köppe <[email protected]> wrote: > > There are some undeclared dependencies - see > https://trac.sagemath.org/ticket/31403 > > On Wednesday, April 27, 2022 at 12:43:34 PM UTC-7 François Bissey wrote: > Actually, that means libcliquer is not installed as a dependency of nauty. > Those symbols are supposed to be from libcliquer. > > > On 28/04/2022, at 03:43, Dima Pasechnik <[email protected]> wrote: > > > > > > > > On Wed, 27 Apr 2022, 16:26 David Joyner, <[email protected]> wrote: > > On Wed, Apr 27, 2022 at 10:44 AM Dima Pasechnik <[email protected]> wrote: > > > > > > This looks like incompatiblity with system-wide nauty (I assume Sage > > > installed its own nauty, right?/ > > > > > > Can you uninstall the system nauty and try again? > > > > > > > I don't see a system-wide nauty. I installed giac 1.6.0 using > > sudo apt install xcas > > but > > ./config.status --recheck && ./config.status > > make > > didn't seem to pick it up. > > > > the system wide giac might come with libnauty, no? Anyway, the following > > are errors from you log, and they are about > > missing symbols in a copy of libnauty.so > > in /usr/lib > > > > So you do have it there.... > > > > > > 619 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `graph > > _free@CLIQUER_1' > > 620 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `cliqu > > e_unweighted_find_single@CLIQUER_1' > > 621 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `graph > > _new@CLIQUER_1' > > > > > > > > > > > > > On Wed, 27 Apr 2022, 14:57 David Joyner, <[email protected]> wrote: > > >> > > >> Hi: > > >> > > >> On a Ubuntu 21.10 laptop, I got this: > > >> > > >> The following package(s) may have failed to build (not necessarily > > >> during this run of 'make all-start'): > > >> * package: giac-1.6.0.47p3.p0 > > >> > > >> The log file is attached. > > >> > > >> - David Joyner > > >> > > >> On Mon, Apr 25, 2022 at 6:48 PM Volker Braun <[email protected]> wrote: > > >> > > > >> > As always, you can get the latest beta version from the "develop" git > > >> > branch. Alternatively, the self-contained source tarball is at > > >> > http://www.sagemath.org/download-latest.html > > >> > > > >> > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to > > >> > 9.6.rc2 > > >> > 9b2069cf00 Trac #33747: Fix workflow build.yml > > >> > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > > >> > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a > > >> > dependency > > >> > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a > > >> > doctest is tagged with # tol > > >> > a68c14444a Trac #33729: Latex display of integer mod ring is broken > > >> > 14be90c7b8 Trac #33724: GH Actions: Use > > >> > --enable-download-from-upstream-url in build, doc-build workflows > > >> > 4c9e563885 Trac #33722: symengine: Fix install script > > >> > f1c3da866a Trac #33694: Developer manual: Remove mention of > > >> > SAGE_ROOT/src/module_list.py > > >> > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > > >> > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > > >> > Vrepresentation > > >> > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's > > >> > Guide > > >> > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by > > >> > default > > >> > 781a14a17d Trac #33521: doctesting with pytest fails on system install > > >> > of sage > > >> > 79dc3dfb7c Trac #33088: More updates for installation and developer > > >> > guides > > >> > b5a7bd11a3 Trac #33078: Update package info for system python3 on > > >> > Cygwin > > >> > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > > >> > > > >> > -- > > >> > You received this message because you are subscribed to the Google > > >> > Groups "sage-release" group. > > >> > To unsubscribe from this group and stop receiving emails from it, send > > >> > an email to [email protected]. > > >> > To view this discussion on the web visit > > >> > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com. > > >> > > > >> > > >> -- > > >> You received this message because you are subscribed to the Google > > >> Groups "sage-release" group. > > >> To unsubscribe from this group and stop receiving emails from it, send > > >> an email to [email protected]. > > >> To view this discussion on the web visit > > >> https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com. > > >> > > > > > > -- > > > You received this message because you are subscribed to the Google Groups > > > "sage-release" group. > > > To unsubscribe from this group and stop receiving emails from it, send an > > > email to [email protected]. > > > To view this discussion on the web visit > > > https://groups.google.com/d/msgid/sage-release/CAAWYfq1Ha8zgvRU_H1dCdy_GLy4%2BJ%2B4QHBV2MHssJYS3gN8DZg%40mail.gmail.com. > > > > > > > -- > > You received this message because you are subscribed to the Google Groups > > "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to [email protected]. > > To view this discussion on the web visit > > https://groups.google.com/d/msgid/sage-release/CAEQuuAWGP6P2wsjyqJVjCZyO_pWemj5OBFyOXs%2Bt8DUAgEqm-g%40mail.gmail.com. > > > > > > -- > > You received this message because you are subscribed to the Google Groups > > "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to [email protected]. > > To view this discussion on the web visit > > https://groups.google.com/d/msgid/sage-release/CAAWYfq0oDo6wu0Ga6ByVdU%3DsMOvAvt9_3kTjXK9bU22whWEODA%40mail.gmail.com. > > > > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/02a4d4d4-f104-4611-b60b-36aa45d1e9a2n%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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