please post config.log, and logs/pkgs/sagelib-10.2.beta7.log
In your previous install.log I see
[sagelib-10.2.beta7] Error compiling Cython file:
[sagelib-10.2.beta7]
------------------------------------------------------------
[sagelib-10.2.beta7] ...
[sagelib-10.2.beta7] # -*- coding: utf-8 -*-
[sagelib-10.2.beta7] ^
[sagelib-10.2.beta7]
------------------------------------------------------------
[sagelib-10.2.beta7]
[sagelib-10.2.beta7] sage/sets/disjoint_set.pyx:1:0: Compiler
crash in DebugTransform
[sagelib-10.2.beta7]
[sagelib-10.2.beta7]
[sagelib-10.2.beta7] Compiler crash traceback from this point on:
[sagelib-10.2.beta7] File "Cython/Compiler/Visitor.py", line
182, in Cython.Compiler.Visitor.TreeVisitor._visit
[sagelib-10.2.beta7] File
"/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Compiler/ParseTreeTransforms.py",
line 4053, in visit_ModuleNode
[sagelib-10.2.beta7] self.visit_FuncDefNode(nested_funcdef)
[sagelib-10.2.beta7] File
"/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Compiler/ParseTreeTransforms.py",
line 4113, in visit_FuncDefNode
[sagelib-10.2.beta7] self.tb.start(arg.name)
[sagelib-10.2.beta7] File
"/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Debugger/DebugWriter.py",
line 42, in start
[sagelib-10.2.beta7] self.tb.start(name, attrs or {})
[sagelib-10.2.beta7] File "src/lxml/saxparser.pxi", line 841, in
lxml.etree.TreeBuilder.start
[sagelib-10.2.beta7] File "src/lxml/saxparser.pxi", line 769, in
lxml.etree.TreeBuilder._handleSaxStart
[sagelib-10.2.beta7] File "src/lxml/apihelpers.pxi", line 179,
in lxml.etree._makeSubElement
[sagelib-10.2.beta7] File "src/lxml/apihelpers.pxi", line 1754,
in lxml.etree._tagValidOrRaise
[sagelib-10.2.beta7] ValueError: Invalid tag name '.0'
which should disappear from your install.log after you applied the patch.
But the other error, this is something different.
On Mon, Oct 16, 2023 at 3:12 PM Emmanuel Charpentier
<[email protected]> wrote:
>
> Nope again : make sagelib-clean sagelib uninstall works, but make -j8 build
> (or even make build) fails again:
>
> [ Again a bunch of lines elided… ]
>
> [sagelib-10.2.beta7] [553/557] Cythonizing sage/symbolic/expression.pyx
> [sagelib-10.2.beta7] multiprocessing.pool.RemoteTraceback:
> [sagelib-10.2.beta7] """ [sagelib-10.2.beta7] Traceback (most recent call
> last): [sagelib-10.2.beta7] File
> "/usr/lib/python3.11/multiprocessing/pool.py", line 125, in worker
> [sagelib-10.2.beta7] result = (True, func(*args, **kwds))
> [sagelib-10.2.beta7] ^^^^^^^^^^^^^^^^^^^ [sagelib-10.2.beta7] File
> "/usr/lib/python3.11/multiprocessing/pool.py", line 48, in mapstar
> [sagelib-10.2.beta7] return list(map(*args)) [sagelib-10.2.beta7]
> ^^^^^^^^^^^^^^^^ [sagelib-10.2.beta7] File
> "/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Build/Dependencies.py",
> line 1325, in cythonize_one_helper [sagelib-10.2.beta7] return
> cythonize_one(*m) [sagelib-10.2.beta7] ^^^^^^^^^^^^^^^^^ [sagelib-10.2.beta7]
> File
> "/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Build/Dependencies.py",
> line 1301, in cythonize_one [sagelib-10.2.beta7] raise CompileError(None,
> pyx_file) [sagelib-10.2.beta7] Cython.Compiler.Errors.CompileError:
> sage/algebras/finite_dimensional_algebras/finite_dimensional_algebra_element.pyx
> [sagelib-10.2.beta7] """ [sagelib-10.2.beta7] [sagelib-10.2.beta7] The above
> exception was the direct cause of the following exception:
> [sagelib-10.2.beta7] [sagelib-10.2.beta7] Traceback (most recent call last):
> [sagelib-10.2.beta7] File "<string>", line 2, in <module>
> [sagelib-10.2.beta7] File "<pip-setuptools-caller>", line 34, in <module>
> [sagelib-10.2.beta7] File "/usr/local/sage-10/src/setup.py", line 108, in
> <module> [sagelib-10.2.beta7] extensions = cythonize( [sagelib-10.2.beta7]
> ^^^^^^^^^^ [sagelib-10.2.beta7] File
> "/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Build/Dependencies.py",
> line 1125, in cythonize [sagelib-10.2.beta7] result.get(99999) # seconds
> [sagelib-10.2.beta7] ^^^^^^^^^^^^^^^^^ [sagelib-10.2.beta7] File
> "/usr/lib/python3.11/multiprocessing/pool.py", line 774, in get
> [sagelib-10.2.beta7] raise self._value [sagelib-10.2.beta7]
> Cython.Compiler.Errors.CompileError:
> sage/algebras/finite_dimensional_algebras/finite_dimensional_algebra_element.pyx
> [sagelib-10.2.beta7]
> ************************************************************************
> [sagelib-10.2.beta7] Error building the Sage library [sagelib-10.2.beta7]
> ************************************************************************
> [sagelib-10.2.beta7] Please email sage-devel
> (http://groups.google.com/group/sage-devel) [sagelib-10.2.beta7] explaining
> the problem and including the relevant part of the log file
> [sagelib-10.2.beta7] /usr/local/sage-10/logs/pkgs/sagelib-10.2.beta7.log
> [sagelib-10.2.beta7] Describe your computer, operating system, etc.
> [sagelib-10.2.beta7]
> ************************************************************************
> [sagelib-10.2.beta7] error: subprocess-exited-with-error [sagelib-10.2.beta7]
> [sagelib-10.2.beta7] × python setup.py develop did not run successfully.
> [sagelib-10.2.beta7] │ exit code: 1 [sagelib-10.2.beta7] ╰─> See above for
> output. [sagelib-10.2.beta7] [sagelib-10.2.beta7] note: This error originates
> from a subprocess, and is likely not a problem with pip. [sagelib-10.2.beta7]
> full command:
> /usr/local/sage-10/local/var/lib/sage/venv-python3.11/bin/python3 -c '
> [sagelib-10.2.beta7] exec(compile('"'"''"'"''"'"' [sagelib-10.2.beta7] # This
> is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
> [sagelib-10.2.beta7] # [sagelib-10.2.beta7] # - It imports setuptools before
> invoking setup.py, to enable projects that directly [sagelib-10.2.beta7] #
> import from `distutils.core` to work with newer packaging standards.
> [sagelib-10.2.beta7] # - It provides a clear error message when setuptools is
> not installed. [sagelib-10.2.beta7] # - It sets `sys.argv[0]` to the
> underlying `setup.py`, when invoking `setup.py` so [sagelib-10.2.beta7] #
> setuptools doesn'"'"'t think the script is `-c`. This avoids the following
> warning: [sagelib-10.2.beta7] # manifest_maker: standard file '"'"'-c'"'"'
> not found". [sagelib-10.2.beta7] # - It generates a shim setup.py, for
> handling setup.cfg-only projects. [sagelib-10.2.beta7] import os, sys,
> tokenize [sagelib-10.2.beta7] [sagelib-10.2.beta7] try: [sagelib-10.2.beta7]
> import setuptools [sagelib-10.2.beta7] except ImportError as error:
> [sagelib-10.2.beta7] print( [sagelib-10.2.beta7] "ERROR: Can not execute
> `setup.py` since setuptools is not available in " [sagelib-10.2.beta7] "the
> build environment.", [sagelib-10.2.beta7] file=sys.stderr,
> [sagelib-10.2.beta7] ) [sagelib-10.2.beta7] sys.exit(1) [sagelib-10.2.beta7]
> [sagelib-10.2.beta7] __file__ = %r [sagelib-10.2.beta7] sys.argv[0] =
> __file__ [sagelib-10.2.beta7] [sagelib-10.2.beta7] if
> os.path.exists(__file__): [sagelib-10.2.beta7] filename = __file__
> [sagelib-10.2.beta7] with tokenize.open(__file__) as f: [sagelib-10.2.beta7]
> setup_py_code = f.read() [sagelib-10.2.beta7] else: [sagelib-10.2.beta7]
> filename = "<auto-generated setuptools caller>" [sagelib-10.2.beta7]
> setup_py_code = "from setuptools import setup; setup()" [sagelib-10.2.beta7]
> [sagelib-10.2.beta7] exec(compile(setup_py_code, filename, "exec"))
> [sagelib-10.2.beta7] '"'"''"'"''"'"' %
> ('"'"'/usr/local/sage-10/src/setup.py'"'"',), "<pip-setuptools-caller>",
> "exec"))' --no-user-cfg develop --no-deps [sagelib-10.2.beta7] cwd:
> /usr/local/sage-10/src/ [sagelib-10.2.beta7] Rolling back uninstall of
> sagemath-standard [sagelib-10.2.beta7] Moving to
> /usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/sagemath-standard.egg-link
> [sagelib-10.2.beta7] from
> /tmp/pip-uninstall-k63qels8/sagemath-standard.egg-link [sagelib-10.2.beta7]
> error: subprocess-exited-with-error [sagelib-10.2.beta7] [sagelib-10.2.beta7]
> × python setup.py develop did not run successfully. [sagelib-10.2.beta7] │
> exit code: 1 [sagelib-10.2.beta7] ╰─> See above for output.
> [sagelib-10.2.beta7] [sagelib-10.2.beta7] note: This error originates from a
> subprocess, and is likely not a problem with pip. [sagelib-10.2.beta7]
> ********************************************************************************
> [sagelib-10.2.beta7] Error installing [sagelib-10.2.beta7]
> ********************************************************************************
> [sagelib-10.2.beta7] [sagelib-10.2.beta7] real 2m50,697s
> [sagelib-10.2.beta7] user 10m53,566s [sagelib-10.2.beta7] sys 0m18,088s
> make[4]: *** [Makefile:3373 : sagelib-SAGE_VENV-no-deps] Erreur 1 make[3]:
> *** [Makefile:3373 :
> /usr/local/sage-10/local/var/lib/sage/venv-python3.11/var/lib/sage/installed/sagelib-10.2.beta7]
> Erreur 2 make[2]: *** [Makefile:2849 : all-build] Erreur 2 make[2] : on
> quitte le répertoire « /usr/local/sage-10/build/make » real 2m51,203s user
> 11m5,104s sys 0m31,598s
> *************************************************************** Error
> building Sage. The following package(s) may have failed to build (not
> necessarily during this run of 'make all-build'): * package:
> sagelib-10.2.beta7 last build time: 16 oct. 16:10 log file:
> /usr/local/sage-10/logs/pkgs/sagelib-10.2.beta7.log It is safe to delete any
> log files and build directories, but they contain information that is helpful
> for debugging build problems. WARNING: If you now run 'make' again, the build
> directory of the same version of the package will, by default, be deleted.
> Set the environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.
> make[1]: *** [Makefile:40 : all-build] Erreur 1 make[1] : on quitte le
> répertoire « /usr/local/sage-10 » make: *** [Makefile:16 : build] Erreur 2
> real 2m52,299s user 11m6,822s sys 0m35,210s
> Le lundi 16 octobre 2023 à 15:06:42 UTC+2, Dima Pasechnik a écrit :
>>
>>
>>
>> On Mon, 16 Oct 2023, 14:04 Emmanuel Charpentier, <[email protected]>
>> wrote:
>>>
>>> Nope...
>>>
>>> `make cython` succeeds. Bit `make build fails :
>>
>>
>> oops, sorry, you need to clean sagelib first.
>>
>> make sagelib-clean sagelib-uninstall
>>
>>
>>>
>>> ```
>>> [sagelib-10.2.beta7] [85/85] Cythonizing sage/symbolic/expression.pyx
>>> [sagelib-10.2.beta7] multiprocessing.pool.RemoteTraceback:
>>> [sagelib-10.2.beta7] """
>>> [sagelib-10.2.beta7] Traceback (most recent call last):
>>> [sagelib-10.2.beta7] File
>>> "/usr/lib/python3.11/multiprocessing/pool.py", line 125, in worker
>>> [sagelib-10.2.beta7] result = (True, func(*args, **kwds))
>>> [sagelib-10.2.beta7] ^^^^^^^^^^^^^^^^^^^
>>> [sagelib-10.2.beta7] File
>>> "/usr/lib/python3.11/multiprocessing/pool.py", line 48, in mapstar
>>> [sagelib-10.2.beta7] return list(map(*args))
>>> [sagelib-10.2.beta7] ^^^^^^^^^^^^^^^^
>>> [sagelib-10.2.beta7] File
>>> "/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Build/Dependencies.py",
>>> line 1325, in cythonize_one_helper
>>> [sagelib-10.2.beta7] return cythonize_one(*m)
>>> [sagelib-10.2.beta7] ^^^^^^^^^^^^^^^^^
>>> [sagelib-10.2.beta7] File
>>> "/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Build/Dependencies.py",
>>> line 1301, in cythonize_one
>>> [sagelib-10.2.beta7] raise CompileError(None, pyx_file)
>>> [sagelib-10.2.beta7] Cython.Compiler.Errors.CompileError:
>>> sage/combinat/combinat_cython.pyx
>>> [sagelib-10.2.beta7] """
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] The above exception was the direct cause of the
>>> following exception:
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] Traceback (most recent call last):
>>> [sagelib-10.2.beta7] File "<string>", line 2, in <module>
>>> [sagelib-10.2.beta7] File "<pip-setuptools-caller>", line 34, in
>>> <module>
>>> [sagelib-10.2.beta7] File "/usr/local/sage-10/src/setup.py", line
>>> 108, in <module>
>>> [sagelib-10.2.beta7] extensions = cythonize(
>>> [sagelib-10.2.beta7] ^^^^^^^^^^
>>> [sagelib-10.2.beta7] File
>>> "/usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/Cython/Build/Dependencies.py",
>>> line 1125, in cythonize
>>> [sagelib-10.2.beta7] result.get(99999) # seconds
>>> [sagelib-10.2.beta7] ^^^^^^^^^^^^^^^^^
>>> [sagelib-10.2.beta7] File
>>> "/usr/lib/python3.11/multiprocessing/pool.py", line 774, in get
>>> [sagelib-10.2.beta7] raise self._value
>>> [sagelib-10.2.beta7] Cython.Compiler.Errors.CompileError:
>>> sage/combinat/combinat_cython.pyx
>>> [sagelib-10.2.beta7]
>>> ************************************************************************
>>> [sagelib-10.2.beta7] Error building the Sage library
>>> [sagelib-10.2.beta7]
>>> ************************************************************************
>>> [sagelib-10.2.beta7] Please email sage-devel
>>> (http://groups.google.com/group/sage-devel)
>>> [sagelib-10.2.beta7] explaining the problem and including the relevant
>>> part of the log file
>>> [sagelib-10.2.beta7]
>>> /usr/local/sage-10/logs/pkgs/sagelib-10.2.beta7.log
>>> [sagelib-10.2.beta7] Describe your computer, operating system, etc.
>>> [sagelib-10.2.beta7]
>>> ************************************************************************
>>> [sagelib-10.2.beta7] error: subprocess-exited-with-error
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] × python setup.py develop did not run successfully.
>>> [sagelib-10.2.beta7] │ exit code: 1
>>> [sagelib-10.2.beta7] ╰─> See above for output.
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] note: This error originates from a subprocess, and
>>> is likely not a problem with pip.
>>> [sagelib-10.2.beta7] full command:
>>> /usr/local/sage-10/local/var/lib/sage/venv-python3.11/bin/python3 -c '
>>> [sagelib-10.2.beta7] exec(compile('"'"''"'"''"'"'
>>> [sagelib-10.2.beta7] # This is <pip-setuptools-caller> -- a caller that
>>> pip uses to run setup.py
>>> [sagelib-10.2.beta7] #
>>> [sagelib-10.2.beta7] # - It imports setuptools before invoking
>>> setup.py, to enable projects that directly
>>> [sagelib-10.2.beta7] # import from `distutils.core` to work with
>>> newer packaging standards.
>>> [sagelib-10.2.beta7] # - It provides a clear error message when
>>> setuptools is not installed.
>>> [sagelib-10.2.beta7] # - It sets `sys.argv[0]` to the underlying
>>> `setup.py`, when invoking `setup.py` so
>>> [sagelib-10.2.beta7] # setuptools doesn'"'"'t think the script is
>>> `-c`. This avoids the following warning:
>>> [sagelib-10.2.beta7] # manifest_maker: standard file '"'"'-c'"'"'
>>> not found".
>>> [sagelib-10.2.beta7] # - It generates a shim setup.py, for handling
>>> setup.cfg-only projects.
>>> [sagelib-10.2.beta7] import os, sys, tokenize
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] try:
>>> [sagelib-10.2.beta7] import setuptools
>>> [sagelib-10.2.beta7] except ImportError as error:
>>> [sagelib-10.2.beta7] print(
>>> [sagelib-10.2.beta7] "ERROR: Can not execute `setup.py` since
>>> setuptools is not available in "
>>> [sagelib-10.2.beta7] "the build environment.",
>>> [sagelib-10.2.beta7] file=sys.stderr,
>>> [sagelib-10.2.beta7] )
>>> [sagelib-10.2.beta7] sys.exit(1)
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] __file__ = %r
>>> [sagelib-10.2.beta7] sys.argv[0] = __file__
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] if os.path.exists(__file__):
>>> [sagelib-10.2.beta7] filename = __file__
>>> [sagelib-10.2.beta7] with tokenize.open(__file__) as f:
>>> [sagelib-10.2.beta7] setup_py_code = f.read()
>>> [sagelib-10.2.beta7] else:
>>> [sagelib-10.2.beta7] filename = "<auto-generated setuptools caller>"
>>> [sagelib-10.2.beta7] setup_py_code = "from setuptools import setup;
>>> setup()"
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] exec(compile(setup_py_code, filename, "exec"))
>>> [sagelib-10.2.beta7] '"'"''"'"''"'"' %
>>> ('"'"'/usr/local/sage-10/src/setup.py'"'"',), "<pip-setuptools-caller>",
>>> "exec"))' --no-user-cfg develop --no-deps
>>> [sagelib-10.2.beta7] cwd: /usr/local/sage-10/src/
>>> [sagelib-10.2.beta7] Rolling back uninstall of sagemath-standard
>>> [sagelib-10.2.beta7] Moving to
>>> /usr/local/sage-10/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/sagemath-standard.egg-link
>>> [sagelib-10.2.beta7] from
>>> /tmp/pip-uninstall-8mtj1z6r/sagemath-standard.egg-link
>>> [sagelib-10.2.beta7] error: subprocess-exited-with-error
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] × python setup.py develop did not run successfully.
>>> [sagelib-10.2.beta7] │ exit code: 1
>>> [sagelib-10.2.beta7] ╰─> See above for output.
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] note: This error originates from a subprocess, and is
>>> likely not a problem with pip.
>>> [sagelib-10.2.beta7]
>>> ********************************************************************************
>>> [sagelib-10.2.beta7] Error installing
>>> [sagelib-10.2.beta7]
>>> ********************************************************************************
>>> [sagelib-10.2.beta7]
>>> [sagelib-10.2.beta7] real 0m51,149s
>>> [sagelib-10.2.beta7] user 2m36,755s
>>> [sagelib-10.2.beta7] sys 0m8,185s
>>> make[4]: *** [Makefile:3373 : sagelib-SAGE_VENV-no-deps] Erreur 1
>>> make[3]: *** [Makefile:3373 :
>>> /usr/local/sage-10/local/var/lib/sage/venv-python3.11/var/lib/sage/installed/sagelib-10.2.beta7]
>>> Erreur 2
>>> make[2]: *** [Makefile:2849 : all-build] Erreur 2
>>> make[2] : on quitte le répertoire « /usr/local/sage-10/build/make »
>>>
>>> real 0m51,674s
>>> user 2m39,788s
>>> sys 0m11,577s
>>> ***************************************************************
>>> Error building Sage.
>>>
>>> The following package(s) may have failed to build (not necessarily
>>> during this run of 'make all-build'):
>>>
>>> * package: sagelib-10.2.beta7
>>> last build time: 16 oct. 15:01
>>> log file: /usr/local/sage-10/logs/pkgs/sagelib-10.2.beta7.log
>>>
>>> It is safe to delete any log files and build directories, but they
>>> contain information that is helpful for debugging build problems.
>>> WARNING: If you now run 'make' again, the build directory of the
>>> same version of the package will, by default, be deleted. Set the
>>> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.
>>>
>>> make[1]: *** [Makefile:40 : all-build] Erreur 1
>>> make[1] : on quitte le répertoire « /usr/local/sage-10 »
>>> make: *** [Makefile:16 : build] Erreur 2
>>>
>>> real 0m52,809s
>>> user 2m41,021s
>>> sys 0m12,733s
>>> ```
>>>
>>> Hints ?
>>>
>>>
>>> Le lundi 16 octobre 2023 à 10:37:35 UTC+2, Dima Pasechnik a écrit :
>>>>
>>>> On Mon, Oct 16, 2023 at 09:16:46AM +0200, [email protected] wrote:
>>>> > More examination of the `install.log` file shows a raft of Cython
>>>> > errors. `install.log` (compressed) enclosed.
>>>> I think this shows that certain patch for Cython 3.0.2 (Cython PR #5690)
>>>> must have been included.
>>>> E.g. it's in the branch of https://github.com/sagemath/sage/pull/36332,
>>>> the file build/pkgs/cython/patches/5690.patch there
>>>>
>>>> So you can do
>>>>
>>>> git pull <...> pull/36332/head
>>>>
>>>> (where <...> should be the remote name of main Sagemath git repo, often
>>>> called origin, or upstream)
>>>> to install it, and then run
>>>>
>>>> make cython
>>>>
>>>> followed by
>>>>
>>>> make build
>>>>
>>>>
>>>>
>>>> Dima
>>>>
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