On 9/19/07, Francis Clarke <[EMAIL PROTECTED]> wrote: > > > While doing "sage -upgrade" I got: > > > sage: An error occurred while installing python_gnutls-1.1.1 > Please email William Stein <[EMAIL PROTECTED]> explaining the > problem and send him the relevant part of > of /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/install.log. Don't send the > whole thing. > > > There was no occurrence of "python_gnutls-1.1.1" in the install.log, but the > relevant bit of the terminal output was as below. Sage seems to run ok > despite this installation error. >
The only thing that python_gnutls is used for by Sage is running an encrypted SAGE notebook server, so you should be ok without it. You may want to do from SAGE_ROOT touch spkg/installed/python_gnutls-1.1.1 then make to continue the upgrade as if gnutls was correctly installed. > > Francis Clarke > Department of Mathematics > University of Wales Swansea > Swansea > SA2 8PP > > ________________________________ > > > > sage-spkg python_gnutls-1.1.1 2>&1 > python_gnutls-1.1.1 > Machine: > Darwin unknown-00-17-f2-9b-90-ae.home 8.10.1 Darwin Kernel Version 8.10.1: > Wed May 23 16:33:00 PDT 2007; root:xnu-792.22.5~1/RELEASE_I386 i386 i386 > Deleting directories from past builds of previous/current versions of > python_gnutls-1.1.1 > Extracting package > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/spkg/standard/python_gnutls-1.1.1.spkg > ... > -rw-r--r-- 1 mafwc mafwc 59167 Sep 19 21:15 > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/spkg/standard/python_gnutls-1.1.1.spkg > python_gnutls-1.1.1/ > python_gnutls-1.1.1/.hg/ > python_gnutls-1.1.1/.hg/dirstate > python_gnutls-1.1.1/.hg/requires > python_gnutls-1.1.1/.hg/store/ > python_gnutls-1.1.1/.hg/store/undo > python_gnutls-1.1.1/.hg/store/data/ > python_gnutls-1.1.1/.hg/store/data/spkg-install.i > python_gnutls-1.1.1/.hg/store/data/patches/ > python_gnutls-1.1.1/.hg/store/data/patches/functions.py.i > python_gnutls-1.1.1/.hg/store/data/patches/osx.patch.i > python_gnutls-1.1.1/.hg/store/data/patches/setup.py.i > python_gnutls-1.1.1/.hg/store/00manifest.i > python_gnutls-1.1.1/.hg/store/00changelog.i > python_gnutls-1.1.1/.hg/undo.dirstate > python_gnutls-1.1.1/.hg/00changelog.i > python_gnutls-1.1.1/spkg-install > python_gnutls-1.1.1/patches/ > python_gnutls-1.1.1/patches/osx.patch > python_gnutls-1.1.1/patches/functions.py > python_gnutls-1.1.1/patches/setup.py > python_gnutls-1.1.1/src/ > python_gnutls-1.1.1/src/README > python_gnutls-1.1.1/src/examples/ > python_gnutls-1.1.1/src/examples/server.py > python_gnutls-1.1.1/src/examples/osc.py > python_gnutls-1.1.1/src/examples/oss.py > python_gnutls-1.1.1/src/examples/._twisted-server.py > python_gnutls-1.1.1/src/examples/c.py > python_gnutls-1.1.1/src/examples/README > python_gnutls-1.1.1/src/examples/certs/ > python_gnutls-1.1.1/src/examples/certs/crl.pem > python_gnutls-1.1.1/src/examples/certs/valid.crt > python_gnutls-1.1.1/src/examples/certs/revoked.crt > python_gnutls-1.1.1/src/examples/certs/revoked.key > python_gnutls-1.1.1/src/examples/certs/ca.pem > python_gnutls-1.1.1/src/examples/certs/valid.key > python_gnutls-1.1.1/src/examples/s.py > python_gnutls-1.1.1/src/examples/tc.py > python_gnutls-1.1.1/src/examples/ts.py > python_gnutls-1.1.1/src/examples/tso.py > python_gnutls-1.1.1/src/examples/client.py > python_gnutls-1.1.1/src/examples/._twisted-client.py > python_gnutls-1.1.1/src/examples/twisted-server.py > python_gnutls-1.1.1/src/examples/crypto.py > python_gnutls-1.1.1/src/examples/twisted-client.py > python_gnutls-1.1.1/src/PKG-INFO > python_gnutls-1.1.1/src/MANIFEST.in > python_gnutls-1.1.1/src/gnutls/ > python_gnutls-1.1.1/src/gnutls/validators.py > python_gnutls-1.1.1/src/gnutls/connection.py > python_gnutls-1.1.1/src/gnutls/__init__.py > python_gnutls-1.1.1/src/gnutls/library/ > python_gnutls-1.1.1/src/gnutls/library/__init__.py > python_gnutls-1.1.1/src/gnutls/library/functions.py > python_gnutls-1.1.1/src/gnutls/library/constants.py > python_gnutls-1.1.1/src/gnutls/library/_gnutls_init.c > python_gnutls-1.1.1/src/gnutls/library/types.py > python_gnutls-1.1.1/src/gnutls/library/errors.py > python_gnutls-1.1.1/src/gnutls/constants.py > python_gnutls-1.1.1/src/gnutls/interfaces/ > python_gnutls-1.1.1/src/gnutls/interfaces/__init__.py > python_gnutls-1.1.1/src/gnutls/interfaces/twisted/ > python_gnutls-1.1.1/src/gnutls/interfaces/twisted/__init__.py > python_gnutls-1.1.1/src/gnutls/errors.py > python_gnutls-1.1.1/src/gnutls/crypto.py > python_gnutls-1.1.1/src/Makefile > python_gnutls-1.1.1/src/build_inplace > python_gnutls-1.1.1/src/setup.py > python_gnutls-1.1.1/src/debian/ > python_gnutls-1.1.1/src/debian/examples > python_gnutls-1.1.1/src/debian/copyright > python_gnutls-1.1.1/src/debian/changelog > python_gnutls-1.1.1/src/debian/compat > python_gnutls-1.1.1/src/debian/pycompat > python_gnutls-1.1.1/src/debian/rules > python_gnutls-1.1.1/src/debian/control > Finished extraction > **************************************************** > Host system > uname -a: > Darwin unknown-00-17-f2-9b-90-ae.home 8.10.1 Darwin Kernel Version 8.10.1: > Wed May 23 16:33:00 PDT 2007; root:xnu-792.22.5~1/RELEASE_I386 i386 i386 > **************************************************** > **************************************************** > GCC Version > gcc -v > Using built-in specs. > Target: i686-apple-darwin8 > Configured with: /private/var/tmp/gcc/gcc-5363.obj~28/src/configure > --disable-checking -enable-werror --prefix=/usr --mandir=/share/man > --enable-languages=c,objc,c++,obj-c++ > --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ > --with-gxx-include-dir=/include/c++/4.0.0 > --with-slibdir=/usr/lib --build=powerpc-apple-darwin8 --with-arch=nocona > --with-tune=generic --program-prefix= --host=i686-apple-darwin8 > --target=i686-apple-darwin8 > Thread model: posix > gcc version 4.0.1 (Apple Computer, Inc. build 5363) > **************************************************** > running install > running build > running build_py > creating build > creating build/lib.macosx-10.3-i386-2.5 > creating build/lib.macosx-10.3-i386-2.5/gnutls > copying gnutls/__init__.py -> build/lib.macosx-10.3-i386-2.5/gnutls > copying gnutls/connection.py -> build/lib.macosx-10.3-i386-2.5/gnutls > copying gnutls/constants.py -> build/lib.macosx-10.3-i386-2.5/gnutls > copying gnutls/crypto.py -> build/lib.macosx-10.3-i386-2.5/gnutls > copying gnutls/errors.py -> build/lib.macosx-10.3-i386-2.5/gnutls > copying gnutls/validators.py -> build/lib.macosx-10.3-i386-2.5/gnutls > creating build/lib.macosx-10.3-i386-2.5/gnutls/interfaces > copying gnutls/interfaces/__init__.py -> > build/lib.macosx-10.3-i386-2.5/gnutls/interfaces > creating build/lib.macosx-10.3-i386-2.5/gnutls/interfaces/twisted > copying gnutls/interfaces/twisted/__init__.py -> > build/lib.macosx-10.3-i386-2.5/gnutls/interfaces/twisted > creating build/lib.macosx-10.3-i386-2.5/gnutls/library > copying gnutls/library/__init__.py -> > build/lib.macosx-10.3-i386-2.5/gnutls/library > copying gnutls/library/constants.py -> > build/lib.macosx-10.3-i386-2.5/gnutls/library > copying gnutls/library/errors.py -> > build/lib.macosx-10.3-i386-2.5/gnutls/library > copying gnutls/library/functions.py -> > build/lib.macosx-10.3-i386-2.5/gnutls/library > copying gnutls/library/types.py -> > build/lib.macosx-10.3-i386-2.5/gnutls/library > running build_ext > building 'gnutls.library._gnutls_init' extension > creating build/temp.macosx-10.3-i386-2.5 > creating build/temp.macosx-10.3-i386-2.5/gnutls > creating build/temp.macosx-10.3-i386-2.5/gnutls/library > gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd > -DNDEBUG -g -O3 -Wall -Wstrict-prototypes > -I/Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/include/ > -I/Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/include/python2.5 -c > gnutls/library/_gnutls_init.c -o > build/temp.macosx-10.3-i386-2.5/gnutls/library/_gnutls_init.o > gcc -bundle -undefined dynamic_lookup > build/temp.macosx-10.3-i386-2.5/gnutls/library/_gnutls_init.o > -L/Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib/ -lgcrypt -lgnutls > -lgnutls-extra -o > build/lib.macosx-10.3-i386-2.5/gnutls/library/_gnutls_init.so > /usr/bin/ld: warning can't open dynamic library: > /Users/was/tmp/sage-2.6.alpha1/local/lib/libgpg-error.0.dylib referenced > from: /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgcrypt.dylib > (checking for undefined symbols may be affected) (No such file or directory, > errno = 2) > /usr/bin/ld: warning can't open dynamic library: > /usr/local/lib/libintl.3.dylib referenced from: > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgcrypt.dylib > (checking for undefined symbols may be affected) (No such file or directory, > errno = 2) > /usr/bin/ld: warning can't open dynamic library: > /Users/was/tmp/sage-2.6.alpha1/local/lib/libz.1.dylib referenced from: > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls.dylib > (checking for undefined symbols may be affected) (No such file or directory, > errno = 2) > /usr/bin/ld: warning can't open dynamic library: > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib referenced from: > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls-extra.dylib > (checking for undefined symbols may be affected) (No such file or directory, > errno = 2) > /usr/bin/ld: warning multiple definitions of symbol _fread_file > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls-extra.dylib(read-file.o) > definition of _fread_file > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls.dylib(read-file.o) > definition of _fread_file > /usr/bin/ld: warning multiple definitions of symbol _read_binary_file > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls-extra.dylib(read-file.o) > definition of _read_binary_file > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls.dylib(read-file.o) > definition of _read_binary_file > /usr/bin/ld: warning multiple definitions of symbol _read_file > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls-extra.dylib(read-file.o) > definition of _read_file > /Users/mafwc/sage-2.6-intel-mac-i386-Darwin/local/lib//libgnutls.dylib(read-file.o) > definition of _read_file > /usr/bin/ld: Undefined symbols: > _libintl_bindtextdomain referenced from libgnutls.13 expected to be defined > in /usr/local/lib/libintl.3.dylib > _libintl_dgettext referenced from libgnutls.13 expected to be defined in > /usr/local/lib/libintl.3.dylib > _deflate referenced from libgnutls.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libz.1.dylib > _deflateEnd referenced from libgnutls.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libz.1.dylib > _deflateInit2_ referenced from libgnutls.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libz.1.dylib > _inflate referenced from libgnutls.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libz.1.dylib > _inflateEnd referenced from libgnutls.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libz.1.dylib > _inflateInit2_ referenced from libgnutls.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libz.1.dylib > _cdk_armor_filter_use referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_calloc referenced from libgnutls-extra.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_free referenced from libgnutls-extra.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_find referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_find_packet referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_get_packet referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_read_from_mem referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_release referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_walk referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_write_to_mem referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_keydb_get_keyblock referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_keydb_new referenced from libgnutls-extra.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_keydb_search referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_keydb_search_start referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pk_get_mpi referenced from libgnutls-extra.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pk_get_npkey referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pk_get_nskey referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_sk_get_mpi referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_close referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_eof referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_get_length referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_open referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_read referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_seek referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_set_armor_flag referenced from libgnutls-extra.13 expected to > be defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_tmp referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_tmp_from_mem referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_write referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pk_get_fingerprint referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pk_get_keyid referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pk_get_nbits referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_stream_tmp_set_mode referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > __cdk_sig_check referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_find_next referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_kbnode_hash referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_md_close referenced from libgnutls-extra.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_md_open referenced from libgnutls-extra.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pk_check_sigs referenced from libgnutls-extra.13 expected to be > defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_pkt_free referenced from libgnutls-extra.13 expected to be defined in > /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_trustdb_get_ownertrust referenced from libgnutls-extra.13 expected to > be defined in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > _cdk_keydb_get_pk referenced from libgnutls-extra.13 expected to be defined > in /Users/was/tmp/sage-2.6.alpha1/local/lib/libopencdk.8.dylib > collect2: ld returned 1 exit status > error: command 'gcc' failed with exit status 1 > > real 0m1.584s > user 0m0.185s > sys 0m0.208s > sage: An error occured while installing python_gnutls-1.1.1 > > > > -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org 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