On Mon, Jan 25, 2010 at 07:07:51PM -0800, SQ wrote:
> My quest to get sage running on a RHEL/CentOS 5.x x86_64 box
> continues.
>
> Tonight's episode, when trying to build scipy:
>
...
> collect2: ld returned 1 exit status
> /usr/bin/ld: build/temp.linux-x86_64-2.6/libmach.a(d1mach.o):
> relocation R_X86_64_32 against `d9mach_' can not be used when making a
> shared object; recompile with -fPIC
> build/temp.linux-x86_64-2.6/libmach.a: could not read symbols: Bad
> value
> collect2: ld returned 1 exit status
> error: Command "sage_fortran -Wall -shared -Wall -shared -shared build/
> temp.linux-x86_64-2.6/scipy/integrate/_quadpackmodule.o -Lbuild/
> temp.linux-x86_64-2.6 -lquadpack -llinpack_lite -lmach -lgfortran -o
> build/lib.linux-x86_64-2.6/scipy/integrate/_quadpack.so" failed with
> exit status 1
> Error building scipy.
I got it a little further
[...@liberte ~]$ rpm -q gcc gcc-gfortran
gcc-4.1.2-46.el5_4.2.x86_64
gcc-gfortran-4.1.2-46.el5_4.2.x86_64
Finished installing pil-1.1.6.p2.spkg
make[1]: Leaving directory `/Bis/home/tru/build/sage-4.3.1/spkg'
real 174m41.482s
user 107m13.818s
sys 16m40.138s
sphinx-build -b html -d
/Bis/home/tru/build/sage-4.3.1/devel/sage/doc/output/doctrees/en/a_tour_of_sage
/Bis/home/tru/build/sage-4.3.1/devel/sage/doc/en/a_tour_of_sage
/Bis/home/tru/build/sage-4.3.1/devel/sage/doc/output/html/en/a_tour_of_sage
Traceback (most recent call last):
File "/Bis/home/tru/build/sage-4.3.1/local/bin/sphinx-build", line 6, in
<module>
import sage.all
File
"/Bis/home/tru/build/sage-4.3.1/local/lib/python2.6/site-packages/sage/all.py",
line 72, in <module>
from sage.rings.all import *
File
"/Bis/home/tru/build/sage-4.3.1/local/lib/python2.6/site-packages/sage/rings/all.py",
line 94, in <module>
from qqbar import (AlgebraicRealField, is_AlgebraicRealField, AA,
File
"/Bis/home/tru/build/sage-4.3.1/local/lib/python2.6/site-packages/sage/rings/qqbar.py",
line 1416, in <module>
QQxy = QQ['x', 'y']
File "ring.pyx", line 205, in sage.rings.ring.Ring.__getitem__
(sage/rings/ring.c:2685)
File
"/Bis/home/tru/build/sage-4.3.1/local/lib/python2.6/site-packages/sage/rings/polynomial/polynomial_ring_constructor.py",
line 355, in PolynomialRing
R = _multi_variate(base_ring, names, n, sparse, order)
File
"/Bis/home/tru/build/sage-4.3.1/local/lib/python2.6/site-packages/sage/rings/polynomial/polynomial_ring_constructor.py",
line 453, in _multi_variate
from sage.rings.polynomial.multi_polynomial_libsingular import
MPolynomialRing_libsingular
File "multi_polynomial_libsingular.pyx", line 1, in init
sage.rings.polynomial.multi_polynomial_libsingular
(sage/rings/polynomial/multi_polynomial_libsingular.cpp:29451)
File
"/Bis/home/tru/build/sage-4.3.1/local/lib/python2.6/site-packages/sage/libs/singular/__init__.py",
line 8, in <module>
groebner = singular_function('groebner')
File "function.pyx", line 1273, in
sage.libs.singular.function.singular_function
(sage/libs/singular/function.cpp:11103)
File "function.pyx", line 1141, in
sage.libs.singular.function.SingularKernelFunction.__init__
(sage/libs/singular/function.cpp:10853)
File "function.pyx", line 878, in
sage.libs.singular.function.SingularFunction.get_call_handler
(sage/libs/singular/function.cpp:9141)
NotImplementedError
Build finished. The built documents can be found in
/Bis/home/tru/build/sage-4.3.1/devel/sage/doc/output/html/en/a_tour_of_sage
sphinx-build -b html -d
/Bis/home/tru/build/sage-4.3.1/devel/sage/doc/output/doctrees/en/constructions
/Bis/home/tru/build/sage-4.3.1/devel/sage/doc/en/constructions
/Bis/home/tru/build/sage-4.3.1/devel/sage/doc/output/html/en/constructions
Cheers.
Tru
--
Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
mailto:[email protected] | tel/fax +33 1 45 68 87 37/19
Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
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