Ok I tried without success ,below there is the ouput of the try,could you make other suggestions,thanks:
sage -f mpir atlas Force installing mpir atlas Calling sage-spkg on mpir Warning: Attempted to overwrite SAGE_ROOT environment variable mpir Machine: Linux peigneux-desktop 2.6.32-31-generic #61-Ubuntu SMP Fri Apr 8 18:24:35 UTC 2011 i686 GNU/Linux Deleting directories from past builds of previous/current versions of mpir Extracting package /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/standard/mpir-1.2.2.p2.spkg ... -rw-r--r-- 1 peigneux peigneux 107 2011-03-04 14:20 /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/standard/mpir-1.2.2.p2.spkg tar: Ceci ne ressemble pas à une archive de type « tar » tar: Arrêt avec code d'échec à cause des erreurs précédentes Finished extraction sage: After decompressing the directory mpir does not exist This means that the corresponding .spkg needs to be downloaded again. Searching for latest version of mpir Found package mpir-1.2.2.p2 http://www.sagemath.org//packages/optional/mpir-1.2.2.p2.spkg --> mpir-1.2.2.p2.spkg [ ] http://www.sagemath.org//packages/standard/mpir-1.2.2.p2.spkg --> mpir-1.2.2.p2.spkg [..................................................] /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build **************************************************** Host system uname -a: Linux peigneux-desktop 2.6.32-31-generic #61-Ubuntu SMP Fri Apr 8 18:24:35 UTC 2011 i686 GNU/Linux **************************************************** **************************************************** CC Version gcc -v Using built-in specs. Target: i486-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.4.3-4ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --program-suffix=-4.4 --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-plugin --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i486 --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu Thread model: posix gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5) **************************************************** checking build system type... k7-pc-linux-gnu checking host system type... k7-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking ABI=32 checking compiler gcc -m32 -O2 -fomit-frame-pointer ... no, long long reliability test 1 checking compiler gcc -O2 -fomit-frame-pointer ... no, long long reliability test 1 configure: error: could not find a working compiler, see config.log for details Failed to configure. real 0m5.366s user 0m3.212s sys 0m1.532s sage: An error occurred while installing mpir-1.2.2.p2 Please email sage-devel http://groups.google.com/group/sage-devel explaining the problem and send the relevant part of of /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/install.log. Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/mpir-1.2.2.p2 and type 'make check' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/mpir-1.2.2.p2' && '/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/sage' -sh) When you are done debugging, you can type "exit" to leave the subshell. Calling sage-spkg on atlas Warning: Attempted to overwrite SAGE_ROOT environment variable atlas Machine: Linux peigneux-desktop 2.6.32-31-generic #61-Ubuntu SMP Fri Apr 8 18:24:35 UTC 2011 i686 GNU/Linux Deleting directories from past builds of previous/current versions of atlas Extracting package /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/standard/atlas-3.8.3.p16.spkg ... -rw-r--r-- 1 peigneux peigneux 107 2011-03-04 14:20 /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/standard/atlas-3.8.3.p16.spkg tar: Ceci ne ressemble pas à une archive de type « tar » tar: Arrêt avec code d'échec à cause des erreurs précédentes Finished extraction sage: After decompressing the directory atlas does not exist This means that the corresponding .spkg needs to be downloaded again. Searching for latest version of atlas Found package atlas-3.8.3.p16 http://www.sagemath.org//packages/optional/atlas-3.8.3.p16.spkg --> atlas-3.8.3.p16.spkg [ ] http://www.sagemath.org//packages/standard/atlas-3.8.3.p16.spkg --> atlas-3.8.3.p16.spkg [..................................................] /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build **************************************************** Host system uname -a: Linux peigneux-desktop 2.6.32-31-generic #61-Ubuntu SMP Fri Apr 8 18:24:35 UTC 2011 i686 GNU/Linux **************************************************** **************************************************** CC Version gcc -v Using built-in specs. Target: i486-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.4.3-4ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --program-suffix=-4.4 --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-plugin --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i486 --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu Thread model: posix gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5) **************************************************** Platform detected to be 32 bits system_atlas.py:6: DeprecationWarning: os.popen2 is deprecated. Use the subprocess module. fortran = os.popen2(os.environ['SAGE_LOCAL']+'/bin/'+'which_fortran')[1].read() /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16 Deal with PPC4 7447 model and Itanium 2 Updating archinfo_x86.c Updating probe_comp.c Updating Make.top gcc -I/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/include -g -w -c /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c gcc -I/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/include -g -w -o xconfig /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/config.c atlconf_misc.o atlconf_misc.o: In function `CmndResults': /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' ./xconfig -d s /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src/ -d b /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build -Ss flapack /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/local/lib/liblapack.a -Si cputhrchk 0 -Fa alg -fPIC -t 0 -C if /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/local/bin/sage_fortran -b 32 atlconf_misc.o: In function `CmndResults': /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc.o: In function `CmndResults': /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc.o: In function `CmndResults': /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc.o: In function `CmndResults': /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' atlconf_misc_BE.o: In function `CmndResults': /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' gcc -I/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/include -g -w -c /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/probe_comp.c gcc -I/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/include -g -w -o xprobe_comp probe_comp.o atlconf_misc.o atlconf_misc.o: In function `CmndResults': /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/atlconf_misc.c:306: warning: the use of `tmpnam' is dangerous, better use `mkstemp' rm -f config1.out make atlas_run atldir=/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build exe=xprobe_comp args="-v 0 -o atlconf.txt -O 1 -A 20 -Si nof77 0 -Fa ic '-fPIC' -Fa sm '-fPIC' -Fa dm '-fPIC' -Fa sk '-fPIC' -Fa dk '-fPIC' -Fa xc '-fPIC' -C if '/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/local/bin/sage_fortran' -Fa if '-fPIC' -b 32" \ redir=config1.out make[1]: entrant dans le répertoire « /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build » cd /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 20 -Si nof77 0 -Fa ic '-fPIC' -Fa sm '-fPIC' -Fa dm '-fPIC' -Fa sk '-fPIC' -Fa dk '-fPIC' -Fa xc '-fPIC' -C if '/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/local/bin/sage_fortran' -Fa if '-fPIC' -b 32 > config1.out <built-in>:0: internal compiler error: Instruction non permise Please submit a full bug report, with preprocessed source if appropriate. See <file:///usr/share/doc/gcc-4.4/README.Bugs> for instructions. make[2]: *** [IRunF77Comp] Erreur 1 Unable to find usable compiler for F77; abortingMake sure compilers are in your path, and specify good compilers to configure (see INSTALL.txt or 'configure --help' for details)make[1]: *** [atlas_run] Erreur 7 make[1]: quittant le répertoire « /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build » make: *** [IRun_comp] Erreur 2 xconfig: /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build/../src//CONFIG/src/config.c:125: ProbeComp: Assertion `!system(ln)' failed. OS configured as Linux (1) Assembly configured as GAS_x8632 (1) Vector ISA Extension configured as SSE1 (4,48) Architecture configured as K7 (20) Clock rate configured as 1666Mhz Cannot detect CPU throttling. Aborted xconfig exited with 134 make -f Make.top build make[1]: entrant dans le répertoire « /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build » make[1]: Make.top: Aucun fichier ou dossier de ce type make[1]: *** Pas de règle pour fabriquer la cible « Make.top ». Arrêt. make[1]: quittant le répertoire « /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16/ATLAS-build » make: *** [build] Erreur 2 Failed to build ATLAS. Failed to build ATLAS. real 0m8.233s user 0m5.972s sys 0m2.316s sage: An error occurred while installing atlas-3.8.3.p16 Please email sage-devel http://groups.google.com/group/sage-devel explaining the problem and send the relevant part of of /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/install.log. Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16 and type 'make check' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/spkg/build/atlas-3.8.3.p16' && '/home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/sage' -sh) When you are done debugging, you can type "exit" to leave the subshell. Le mardi 26 avril 2011 à 18:00 -0700, William Stein a écrit : > On Tue, Apr 26, 2011 at 8:11 AM, jean-pierre.peigneux > <[email protected]> wrote: > > Hello,I am a new comer I got the binary file > > > > sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux > > > > In the proper directory I tried to start sage as recommended ./sage > > > > First I got the following message: > > > > i686-Linux-i686-Linux$ ./sage > > ---------------------------------------------------------------------- > > | Sage Version 4.6.2, Release Date: 2011-02-25 | > > | Type notebook() for the GUI, and license() for information. | > > ---------------------------------------------------------------------- > > > > ********************************************************************** > > WARNING! This Sage install was built on a machine that supports > > instructions that are not available on this computer. Sage will > > likely fail with ILLEGAL INSTRUCTION errors! The following processor > > flags were on the build machine but are not on this computer: > > > > pni sse2 > > > > Email http://groups.google.com/group/sage-support for help. > > To remove this warning and make Sage start, just delete > > > > /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/local/lib/sage-flags.txt > > ********************************************************************** > > > > > > I follows the advises and removed the so called sage-flags.txt > > > > Then restart sage and got the following message: > > > > i686-Linux-i686-Linux$ ./sage > > ---------------------------------------------------------------------- > > | Sage Version 4.6.2, Release Date: 2011-02-25 | > > | Type notebook() for the GUI, and license() for information. | > > ---------------------------------------------------------------------- > > The Sage install tree may have moved > > (from /home/wstein/build/sage-4.6.2 > > to > > /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux) > > Changing various hardcoded paths > > (please wait at most a few minutes)... > > Do not interrupt this. > > Done resetting paths > > /home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux/local/bin/sage-sage: > > line 300: 23124 Instruction non permise sage-ipython "$@" -i > > > > I would appreciate some hints . Thanks > > Try the following: > > cd > home/peigneux/Bureau/Sage/sage-4.6.2-linux-32bit-ubuntu_10.04_lts-i686-Linux-i686-Linux > ./sage -f mpir atlas > ./sage > > This might work and fix your problem. However, there is a possibility > it will fail when trying to compile atlas due to your fortran issues > (mentioned elsewhere in the thread). > > -- William > -- To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/sage-support URL: http://www.sagemath.org
