I have tried to install sage-4.7.1 in a Linux system x86_64 from
sources. I have installed all the required packages: gcc 4.5.3 (gcc, g+
+, gfortran...), m4, etc. After typing 'make' I obtained this:


sage-4.7.1 $ make
cd spkg && "../spkg/pipestatus" "./install all 2>&1" "tee -a ../
install.log"
*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
SAGENB=sagenb-0.8.19
GD=gd-2.0.35.p5
CONWAY=conway_polynomials-0.2
CLIQUER=cliquer-1.2.p9
MANPATH=/usr/local/share/man:/usr/share/man:/opt/sun-jre/man
READLINE=readline-6.1
JINJA2=jinja2-2.5.5
SAGE_LOGS=/home/name/Applications/sage-4.7.1/spkg/logs
SSH_AGENT_PID=1416
KDE_MULTIHEAD=false
PEXPECT=pexpect-2.0.p4
F2C=f2c-20070816.p2
HOSTNAME=computer
DM_CONTROL=/var/run/xdmctl
MATPLOTLIB=matplotlib-1.0.1
G2RED=genus2reduction-0.3.p8
LIBM4RI=libm4ri-20100701.p1
GPG_AGENT_INFO=/tmp/gpg-AaoDbU/S.gpg-agent:1443:1
SAGE_BZIP2=bzip2-1.0.5
TERM=xterm
SHELL=/bin/bash
CYTHON=cython-0.14.1.p3
MAKEFLAGS=
XDG_SESSION_COOKIE=23682230fb9e63220aefc9d900000720-1316946020.554304-920956725
XDM_MANAGED=method=classic
KONSOLE_DBUS_SERVICE=:1.75
GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/home/name/.gtkrc-2.0:/usr/share/kde4/
config/gtkrc:/home/name/.kde/share/config/gtkrc-2.0
SQLALCHEMY=sqlalchemy-0.5.8
DOCUTILS=docutils-0.7.p0
ZNPOLY=zn_poly-0.9.p5
SYMMETRICA=symmetrica-2.0.p5
GIVARO=givaro-3.2.13rc2.p2
GS_LIB=/home/name/.fonts
GTK_RC_FILES=/etc/gtk/gtkrc:/home/name/.gtkrc:/usr/share/kde4/config/
gtkrc:/home/name/.kde/share/config/gtkrc
SAGETEX=sagetex-2.2.5
MPFR=mpfr-2.4.2
WINDOWID=52428837
SYMPY=sympy-0.6.4.p0
POLYTOPES_DB=polytopes_db-20100210
OLDPWD=/home/name/Applications/sage-4.7.1
EXAMPLES=examples-4.7.1
ATLAS=atlas-3.8.3.p16
PREREQ=prereq-0.9
DIR=dir-0.1
SHELL_SESSION_ID=4b77847785e44000a5fe6e732fe4c3b4
TACHYON=tachyon-0.98.9.p3
LC_ALL=en_US.UTF-8
KDE_FULL_SESSION=true
MPFI=mpfi-1.3.4-cvs20071125.p8
MERCURIAL=mercurial-1.6.4.p0
CDDLIB=cddlib-094f.p8
ECLIB=eclib-20100711
USER=name
R=r-2.10.1.p4
SPHINX=sphinx-1.0.4.p6
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.pisi=01;33:*.
7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.ogv=01\:
35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:
LIBGCRYPT=libgcrypt-1.4.4.p3
CVXOPT=cvxopt-1.1.3
BOEHM_GC=boehm_gc-7.1.p7
TERMCAP=termcap-1.3.1.p1
MPIR=mpir-1.2.2.p2
SSH_AUTH_SOCK=/tmp/ssh-pODerE1389/agent.1389
ZODB=zodb3-3.7.0.p4
GRAPHS=graphs-20070722.p1
ICONV=iconv-1.13.1.p3
ECL=ecl-11.1.1.p1
CEPHES=cephes-2.8
SAGE_LOCAL=/home/name/Applications/sage-4.7.1/local
MAKELEVEL=1
MC_ENV=/usr/share/mc/bin/mc.sh
SESSION_MANAGER=local/unix:@/tmp/.ICE-unix/1495,unix/unix:/tmp/.ICE-
unix/1495
SAGE_SCRIPTS=sage_scripts-4.7.1
ECM=ecm-6.2.1.p2
PAGER=/usr/bin/less
TWISTED=twisted-9.0.p2
RUBIKS=rubiks-20070912.p17
FREETYPE=freetype-2.3.5.p3
MFLAGS=
PYGMENTS=pygments-1.3.1.p0
FLTK_DOCDIR=/usr/share/doc/fltk/html
GAP=gap-4.4.12.p6
PATH=/home/name/Applications/sage-4.7.1:/home/name/Applications/
sage-4.7.1/local/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/
sbin:/bin:/sbin:/opt/bin:/opt/sun-jre/bin
DESKTOP_SESSION=default
IML=iml-1.0.1.p13
LAPACK=lapack-20071123.p2
EXTCODE=extcode-4.7.1
BLAS=blas-20070724
ZLIB=zlib-1.2.5
SINGULAR=singular-3-1-1-4.p12
GNUTLS=gnutls-2.2.1.p5
POLYBORI=polybori-0.7.0.p4
LIBGPG_ERROR=libgpg_error-1.6.p3
PWD=/home/name/Applications/sage-4.7.1/spkg
JAVA_HOME=/opt/sun-jre
LCALC=lcalc-20100428-1.23.p6
EDITOR=/bin/nano
SCONS=scons-1.2.0
LINBOX=linbox-1.1.6.p3
OPENCDK=opencdk-0.6.6.p5
KDE_SESSION_UID=1000
LANG=en_US.UTF-8
LESSCOLOR=yes
FLINTQS=flintqs-20070817.p5
GDMODULE=gdmodule-0.56.p7
PYTHONSTARTUP=/etc/pythonstart
SCIPY=scipy-0.9
SAGE_ROOT_REPO=sage_root-4.7.1
GFAN=gfan-0.4plus.p1
SAGE_ROOT=/home/name/Applications/sage-4.7.1
SAGE=sage-4.7.1
RATPOINTS=ratpoints-2.1.3.p1
NUMPY=numpy-1.5.1
KONSOLE_DBUS_SESSION=/Sessions/1
PARI=pari-2.4.3.alpha.p7
PATCH=patch-2.5.9.p0
GLPK=glpk-4.44
PPL=ppl-0.11.2
R_HOME_DIR=/usr/lib/R
PALP=palp-1.1.p3
COLORFGBG=15;0
SHLVL=6
HOME=/home/name
PYCRYPTO=pycrypto-2.1.0
GSL=gsl-1.15
PYTHON_GNUTLS=python_gnutls-1.1.4.p7
LANGUAGE=
KDE_SESSION_VERSION=4
IPYTHON=ipython-0.9.1.p0
XCURSOR_THEME=Oxygen_White
FLINT=flint-1.5.0.p5
PYTHONPATH=/home/name/Applications/sage-4.7.1/local
LESS=-R -M --shift 5
LOGNAME=name
SQLITE=sqlite-3.7.5
CVS_RSH=ssh
MPMATH=mpmath-0.17
DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-
C7zBX5Lis0,guid=f1ef8d9e91bb1ba5b3fca45c00000026
XDG_DATA_DIRS=/usr/share/kde4:/usr/share:/usr/local/share
NTL=ntl-5.5.2
FORTRAN=fortran-20100629
PIL=pil-1.1.6.p4
LESSOPEN=|lesspipe.sh %s
R_HOME=/usr/lib/R
SYMPOW=sympow-1.018.1.p9
PYNAC=pynac-0.2.3
MAXIMA=maxima-5.23.2.p0
WINDOWPATH=8
INFOPATH=/usr/share/info
FPLLL=libfplll-3.0.12.p1
DISPLAY=:0
PROFILEHOME=
LADSPA_PATH=/usr/lib/ladspa
QT_PLUGIN_PATH=/home/name/.kde/lib/kde4/plugins/:/usr/lib/kde4/
plugins/
SETUPTOOLS=setuptools-0.6.16
SANE_CONFIG_DIR=/etc/sane.d
MOIN=moin-1.9.1.p2
ELLIPTIC_CURVES=elliptic_curves-0.1
BOOST_CROPPED=boost-cropped-1.34.1
LDPATH=/opt/sun-jre/lib
PYTHON=python-2.6.4.p11
NETWORKX=networkx-1.2.p1
LIBPNG=libpng-1.2.35.p3
G_BROKEN_FILENAMES=1
_=/usr/bin/env
***********************************************
make[1]: Entering directory `/home/name/Applications/sage-4.7.1/spkg'
/home/name/Applications/sage-4.7.1/spkg/pipestatus "base/dir-0.1-
install 2>&1" "tee -a /home/name/Applications/sage-4.7.1/spkg/logs/
dir-0.1.log"
../data/
../local/
../local/etc
../local/lib
../local/bin
../local/include
../tmp/
/home/name/Applications/sage-4.7.1/spkg/build
installed/
/home/name/Applications/sage-4.7.1/spkg/pipestatus "base/prereq-0.9-
install 2>&1" "tee -a /home/name/Applications/sage-4.7.1/spkg/logs/
prereq-0.9.log"
Starting prerequisite check.
Machine: Linux computer 2.6.37.6 #1 SMP Wed Mar 30 15:28:53 EEST 2011
x86_64 x86_64 x86_64 GNU/Linux
prereq-0.9/
prereq-0.9/aclocal.m4
prereq-0.9/autom4te.cache/
prereq-0.9/config.guess
prereq-0.9/config.h.in
prereq-0.9/config.h.in~
prereq-0.9/config.sub
prereq-0.9/configure
prereq-0.9/configure.ac
prereq-0.9/depcomp
prereq-0.9/install-sh
prereq-0.9/m4/
prereq-0.9/Makefile.am
prereq-0.9/Makefile.in
prereq-0.9/missing
prereq-0.9/m4/ax_c_check_flag.m4
prereq-0.9/m4/ax_gcc_option.m4
prereq-0.9/m4/ax_gcc_version.m4
prereq-0.9/m4/ax_gxx_option.m4
prereq-0.9/m4/ax_gxx_version.m4
prereq-0.9/m4/ax_prog_perl_version.m4
prereq-0.9/m4/ax_with_perl.4
prereq-0.9/autom4te.cache/output.0
prereq-0.9/autom4te.cache/output.1
prereq-0.9/autom4te.cache/output.2
prereq-0.9/autom4te.cache/requests
prereq-0.9/autom4te.cache/traces.0
prereq-0.9/autom4te.cache/traces.1
prereq-0.9/autom4te.cache/traces.2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C preprocessor... /lib/cpp
configure: error: in `/home/name/Applications/sage-4.7.1/spkg/build/
prereq-0.9':
configure: error: C preprocessor "/lib/cpp" fails sanity check
See `config.log' for more details
 ERROR: You do not have all of the prerequisites needed
 to build Sage from source.  See the errors above.
make[1]: *** [installed/prereq-0.9] Error 1
make[1]: Leaving directory `/home/name/Applications/sage-4.7.1/spkg'

real    0m4.826s
user    0m0.444s
sys     0m0.560s
Error building Sage.
make: *** [build] Error 1




Do I need to run make as root?
Any idea about what has caused the error?

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