I am trying to install sage 5.3 from source on debian squeeze running on a virtual machine with intel xeon cpu. The kernel is 2.6.32-5-686.
make stops with "error building libm4rie". This is the log file: libm4rie-20120613 ==================================================== Extracting package /var/data/sage-5.3/spkg/standard/libm4rie-20120613.spkg -rw-r--r-- 1 sage sage 365950 Sep 8 14:46 /var/data/sage-5.3/spkg/standard/libm4rie-20120613.spkg Finished extraction **************************************************** Host system: Linux luna 2.6.32-5-686 #1 SMP Sun Sep 23 09:49:36 UTC 2012 i686 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/var/data/sage-5.3/local/libexec/gcc/i686-pc-linux-gnu/4.6.3/lto-wrapper Target: i686-pc-linux-gnu Configured with: ../src/configure --prefix=/var/data/sage-5.3/local --with-local-prefix=/var/data/sage-5.3/local --with-gmp=/var/data/sage-5.3/local --with-mpfr=/var/data/sage-5.3/local --with-mpc=/var/data/sage-5.3/local --with-system-zlib --disable-multilib Thread model: posix gcc version 4.6.3 (GCC) **************************************************** checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... ld checking if the linker (ld) is GNU ld... yes checking whether the g++ linker (ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gcc option to accept ISO C99... -std=gnu99 checking for M4RI CFLAGS... -mmmx -msse -msse2 -msse3 checking whether make sets $(MAKE)... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating bench/Makefile config.status: creating m4rie/config.h config.status: executing depfiles commands config.status: executing libtool commands make[2]: Entering directory `/var/data/sage-5.3/spkg/build/libm4rie-20120613/src' Making all in . make[3]: Entering directory `/var/data/sage-5.3/spkg/build/libm4rie-20120613/src' /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT gf2e.lo -MD -MP -MF .deps/gf2e.Tpo -c -o gf2e.lo `test -f 'm4rie/gf2e.c' || echo './'`m4rie/gf2e.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT gf2e.lo -MD -MP -MF .deps/gf2e.Tpo -c m4rie/gf2e.c -fPIC -DPIC -o .libs/gf2e.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT gf2e.lo -MD -MP -MF .deps/gf2e.Tpo -c m4rie/gf2e.c -o gf2e.o >/dev/null 2>&1 mv -f .deps/gf2e.Tpo .deps/gf2e.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzed.lo -MD -MP -MF .deps/mzed.Tpo -c -o mzed.lo `test -f 'm4rie/mzed.c' || echo './'`m4rie/mzed.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzed.lo -MD -MP -MF .deps/mzed.Tpo -c m4rie/mzed.c -fPIC -DPIC -o .libs/mzed.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzed.lo -MD -MP -MF .deps/mzed.Tpo -c m4rie/mzed.c -o mzed.o >/dev/null 2>&1 mv -f .deps/mzed.Tpo .deps/mzed.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT newton_john.lo -MD -MP -MF .deps/newton_john.Tpo -c -o newton_john.lo `test -f 'm4rie/newton_john.c' || echo './'`m4rie/newton_john.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT newton_john.lo -MD -MP -MF .deps/newton_john.Tpo -c m4rie/newton_john.c -fPIC -DPIC -o .libs/newton_john.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT newton_john.lo -MD -MP -MF .deps/newton_john.Tpo -c m4rie/newton_john.c -o newton_john.o >/dev/null 2>&1 mv -f .deps/newton_john.Tpo .deps/newton_john.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT echelonform.lo -MD -MP -MF .deps/echelonform.Tpo -c -o echelonform.lo `test -f 'm4rie/echelonform.c' || echo './'`m4rie/echelonform.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT echelonform.lo -MD -MP -MF .deps/echelonform.Tpo -c m4rie/echelonform.c -fPIC -DPIC -o .libs/echelonform.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT echelonform.lo -MD -MP -MF .deps/echelonform.Tpo -c m4rie/echelonform.c -o echelonform.o >/dev/null 2>&1 mv -f .deps/echelonform.Tpo .deps/echelonform.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT strassen.lo -MD -MP -MF .deps/strassen.Tpo -c -o strassen.lo `test -f 'm4rie/strassen.c' || echo './'`m4rie/strassen.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT strassen.lo -MD -MP -MF .deps/strassen.Tpo -c m4rie/strassen.c -fPIC -DPIC -o .libs/strassen.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT strassen.lo -MD -MP -MF .deps/strassen.Tpo -c m4rie/strassen.c -o strassen.o >/dev/null 2>&1 mv -f .deps/strassen.Tpo .deps/strassen.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzd_slice.lo -MD -MP -MF .deps/mzd_slice.Tpo -c -o mzd_slice.lo `test -f 'm4rie/mzd_slice.c' || echo './'`m4rie/mzd_slice.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzd_slice.lo -MD -MP -MF .deps/mzd_slice.Tpo -c m4rie/mzd_slice.c -fPIC -DPIC -o .libs/mzd_slice.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzd_slice.lo -MD -MP -MF .deps/mzd_slice.Tpo -c m4rie/mzd_slice.c -o mzd_slice.o >/dev/null 2>&1 mv -f .deps/mzd_slice.Tpo .deps/mzd_slice.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzd_poly.lo -MD -MP -MF .deps/mzd_poly.Tpo -c -o mzd_poly.lo `test -f 'm4rie/mzd_poly.c' || echo './'`m4rie/mzd_poly.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzd_poly.lo -MD -MP -MF .deps/mzd_poly.Tpo -c m4rie/mzd_poly.c -fPIC -DPIC -o .libs/mzd_poly.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT mzd_poly.lo -MD -MP -MF .deps/mzd_poly.Tpo -c m4rie/mzd_poly.c -o mzd_poly.o >/dev/null 2>&1 mv -f .deps/mzd_poly.Tpo .deps/mzd_poly.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT trsm.lo -MD -MP -MF .deps/trsm.Tpo -c -o trsm.lo `test -f 'm4rie/trsm.c' || echo './'`m4rie/trsm.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT trsm.lo -MD -MP -MF .deps/trsm.Tpo -c m4rie/trsm.c -fPIC -DPIC -o .libs/trsm.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT trsm.lo -MD -MP -MF .deps/trsm.Tpo -c m4rie/trsm.c -o trsm.o >/dev/null 2>&1 mv -f .deps/trsm.Tpo .deps/trsm.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT ple.lo -MD -MP -MF .deps/ple.Tpo -c -o ple.lo `test -f 'm4rie/ple.c' || echo './'`m4rie/ple.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT ple.lo -MD -MP -MF .deps/ple.Tpo -c m4rie/ple.c -fPIC -DPIC -o .libs/ple.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT ple.lo -MD -MP -MF .deps/ple.Tpo -c m4rie/ple.c -o ple.o >/dev/null 2>&1 mv -f .deps/ple.Tpo .deps/ple.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT conversion.lo -MD -MP -MF .deps/conversion.Tpo -c -o conversion.lo `test -f 'm4rie/conversion.c' || echo './'`m4rie/conversion.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I./m4rie -I/var/data/sage-5.3/local/include -I/include -mmmx -msse -msse2 -msse3 -O2 -fPIC -Wall -pedantic -g -I/var/data/sage-5.3/local/include -MT conversion.lo -MD -MP -MF .deps/conversion.Tpo -c m4rie/conversion.c -fPIC -DPIC -o .libs/conversion.o gcc: internal compiler error: Killed (program cc1) Please submit a full bug report, with preprocessed source if appropriate. See <http://gcc.gnu.org/bugs.html> for instructions. make[3]: *** [conversion.lo] Error 1 make[3]: Leaving directory `/var/data/sage-5.3/spkg/build/libm4rie-20120613/src' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/var/data/sage-5.3/spkg/build/libm4rie-20120613/src' Error building libm4rie real 3m34.899s user 0m41.691s sys 0m5.996s ************************************************************************ Error installing package libm4rie-20120613 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /var/data/sage-5.3/spkg/logs/libm4rie-20120613.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /var/data/sage-5.3/spkg/build/libm4rie-20120613 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/var/data/sage-5.3/spkg/build/libm4rie-20120613' && '/var/data/sage-5.3/sage' -sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ I am not a linux expert, so any help is appreciated. Thanks, Jerneaux -- You received this message because you are subscribed to the Google Groups "sage-support" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. Visit this group at http://groups.google.com/group/sage-support?hl=en.
