This is now http://trac.sagemath.org/ticket/15656

On Thursday, January 9, 2014 11:00:03 AM UTC-5, kcrisman wrote:
>
>
>
> On Thursday, January 9, 2014 9:44:57 AM UTC-5, Georgi Guninski wrote:
>>
>> Strange results with subgroups of automorphism group of graphs 
>>
>> There is an element in the automorphism group of graph 
>> which is in no subgroup (though the full group is a subgroup). 
>>
>> I suspect the problem is the usage of zero. 
>>
>> G1=Graph(':H`ECw@HGXGAGUG`e');G=G1.automorphism_group();sg=G.subgroups() 
>> print G.gens() 
>>   [(0,7)(1,4)(2,3)(6,8)] 
>> print sg 
>>   [Permutation Group with generators [()], Permutation Group with 
>> generators [(1,8)(2,5)(3,4)(7,9)]] 
>>
>>
> sage: G.gens()
> [(0,7)(1,4)(2,3)(6,8)]
> sage: [s.gens() for s in sg]
> [[()], [(1,8)(2,5)(3,4)(7,9)]]
>
> Yeah, that's a problem.  At least we get
>
> sage: G.is_isomorphic(sg[0])
> False
> sage: G.is_isomorphic(sg[1])
> True
>
> which is trivial but I think it confirms your suspicion.  We seem to have 
> Gap-style numbering in the subgroups and Sage/Python-style numbering in the 
> group itself.  Here's the code:
>
>         all_sg = []
>         ccs = self._gap_().ConjugacyClassesSubgroups()
>         for cc in ccs:
>             for h in cc.Elements():
>                 all_sg.append(PermutationGroup(gap_group=h))
>         return all_sg
>
> So we send self to Gap...
>
> sage: G._gap_()
> Group( [ (1,8)(2,5)(3,4)(7,9) ] )
> sage: G
> Permutation Group with generators [(0,7)(1,4)(2,3)(6,8)]
>
> There we go.
>
> Beezer, you apparently wrote this... how would you recommend fixing this?
>
> I'll open a Trac ticket momentarily.
>

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