I am experiencing the same problem this thread describes.  I have OS X and 
the latest Sage.  I downloaded and installed the latest Xcode.  I am still 
unable to compile Cython in the notebook.

On Monday, January 28, 2013 12:06:23 PM UTC-8, Roger Frye wrote:
>
> It turns out this was just a badly configured Mac.  I had installed Xcode 
> on Mac's Snow Leopard OS and then upgraded the OS to Mountain Lion.  As I 
> was preparing to install Sage 5.6 from source, I upgraded to the latest 
> Xcode.  Now Sage 5.5 loads, compiles and runs hello.spyx with no problems.
> -RogerF
>
> On Friday, January 11, 2013 10:21:42 PM UTC-7, Roger Frye wrote:
>>
>> On an Intel Mac, I just installed Sage for the first time.
>> 'Sage Version 5.5, Release Date: 2012-12-22'
>>
>> When I try to compile any .spyx file including hello.spyz, it fails in 
>> limits.h
>>
>> sage: load "hello.spyx"
>> Compiling ./hello.spyx...
>> Error compiling cython file:
>> Error compiling ./hello.spyx:
>> running build
>> running build_ext
>> building '_Users_rogerfrye_Target_Sage_hello_spyx_1' extension
>> creating build
>> creating build/temp.macosx-10.8-x86_64-2.7
>> gcc -fno-strict-aliasing -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall 
>> -Wstrict-prototypes -I/Applications/sage/local/include/csage 
>> -I/Applications/sage/local/include 
>> -I/Applications/sage/local/include/python2.7 
>> -I/Applications/sage/local/lib/python/site-packages/numpy/core/include 
>> -I/Applications/sage/devel/sage/sage/ext -I/Applications/sage/devel/sage 
>> -I/Applications/sage/devel/sage/sage/gsl -I. 
>> -I/Applications/sage/local/include/python2.7 -c 
>> _Users_rogerfrye_Target_Sage_hello_spyx_1.c -o 
>> build/temp.macosx-10.8-x86_64-2.7/_Users_rogerfrye_Target_Sage_hello_spyx_1.o
>>  
>> -w -O2
>>
>> In file included from 
>> /Applications/sage/local/bin/../lib/gcc/x86_64-apple-darwin12.2.0/4.6.3/include-fixed/syslimits.h:7:0,
>>                  from 
>> /Applications/sage/local/bin/../lib/gcc/x86_64-apple-darwin12.2.0/4.6.3/include-fixed/limits.h:34,
>>                  from 
>> /Applications/sage/local/include/python2.7/Python.h:19,
>>                  from _Users_rogerfrye_Target_Sage_hello_spyx_1.c:4:
>> /Applications/sage/local/bin/../lib/gcc/x86_64-apple-darwin12.2.0/4.6.3/include-fixed/limits.h:169:61:
>>  
>> fatal error: limits.h: No such file or directory
>> compilation terminated.
>> error: command 'gcc' failed with exit status 1
>>
>>

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