I removed all starting with /usr/local on my PATH but getting the same
error on my Homebrew version of Python:
Writing
/Users/tcf/Applications/sage-6.7.rc0/local/lib/python2.7/site-packages/numpy-1.8.1-py2.7.egg-info
running install_clib
copying build/temp.macosx-10.9-x86_64-2.7/libnpymath.a ->
/Users/tcf/Applications/sage-6.7.rc0/local/lib/python2.7/site-packages/numpy/core/lib
Traceback (most recent call last):
File "<stdin>", line 3, in <module>
File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line
170, in <module>
from . import add_newdocs
File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line
13, in <module>
from numpy.lib import add_newdoc
File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line
8, in <module>
from .type_check import *
File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py",
line 11, in <module>
import numpy.core.numeric as _nx
File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py",
line 6, in <module>
from . import multiarray
ImportError:
dlopen(/usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so, 2):
Symbol not found: _PyUnicodeUCS2_AsASCIIString
Referenced from:
/usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so
Expected in: flat namespace
in /usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so
real 2m15.443s
user 1m49.642s
sys 0m8.702s
************************************************************************
Error installing package numpy-1.8.1.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/Users/tcf/Applications/sage-6.7.rc0/logs/pkgs/numpy-1.8.1.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/Users/tcf/Applications/sage-6.7.rc0/local/var/tmp/sage/build/numpy-1.8.1.p0
and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd
'/Users/tcf/Applications/sage-6.7.rc0/local/var/tmp/sage/build/numpy-1.8.1.p0'
&& '/Users/tcf/Applications/sage-6.7.rc0/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
make[2]: ***
[/Users/tcf/Applications/sage-6.7.rc0/local/var/lib/sage/installed/numpy-1.8.1.p0]
Error 1
make[1]: *** [all] Error 2
real 2m19.942s
user 1m50.269s
sys 0m9.297s
***************************************************************
Error building Sage.
The following package(s) may have failed to build:
package: numpy-1.8.1.p0
log file: /Users/tcf/Applications/sage-6.7.rc0/logs/pkgs/numpy-1.8.1.p0.log
build directory:
/Users/tcf/Applications/sage-6.7.rc0/local/var/tmp/sage/build/numpy-1.8.1.p0
The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
make: *** [build] Error 1
On Saturday, May 16, 2015 at 11:38:59 AM UTC-7, Dima Pasechnik wrote:
>
>
>
> On Saturday, 16 May 2015 19:32:16 UTC+1, Ted Fujimoto wrote:
>>
>> Hope this helps:
>>
>> Writing
>> /Users/tcf/Applications/sage-6.7.rc0/local/lib/python2.7/site-packages/numpy-1.8.1-py2.7.egg-info
>> running install_clib
>> copying build/temp.macosx-10.9-x86_64-2.7/libnpymath.a ->
>> /Users/tcf/Applications/sage-6.7.rc0/local/lib/python2.7/site-packages/numpy/core/lib
>> Traceback (most recent call last):
>> File "<stdin>", line 3, in <module>
>> File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line
>> 170, in <module>
>> from . import add_newdocs
>> File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py",
>> line 13, in <module>
>> from numpy.lib import add_newdoc
>> File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py",
>> line 8, in <module>
>> from .type_check import *
>> File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py",
>> line 11, in <module>
>> import numpy.core.numeric as _nx
>> File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py",
>> line 6, in <module>
>> from . import multiarray
>> ImportError:
>> dlopen(/usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so, 2):
>> Symbol not found: _PyUnicodeUCS2_AsASCIIString
>> Referenced from:
>> /usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so
>> Expected in: flat namespace
>> in /usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so
>>
>> real 2m12.107s
>> user 1m50.320s
>> sys 0m8.643s
>> ************************************************************************
>>
>
> indeed, this is the interference from another installation of numpy.
> Before running make, remove everything that starts from /usr/local from
> PATH in the shell you start make from.
> Hopefully it will work then.
> (if not, post the new log...)
>
> OK, we should put Anaconda on our blacklist :-)
>
>
>
>
>> Error installing package numpy-1.8.1.p0
>> ************************************************************************
>> Please email sage-devel (http://groups.google.com/group/sage-devel)
>> explaining the problem and including the relevant part of the log file
>> /Users/tcf/Applications/sage-6.7.rc0/logs/pkgs/numpy-1.8.1.p0.log
>> Describe your computer, operating system, etc.
>> If you want to try to fix the problem yourself, *don't* just cd to
>> /Users/tcf/Applications/sage-6.7.rc0/local/var/tmp/sage/build/numpy-1.8.1.p0
>> and type 'make' or whatever is appropriate.
>> Instead, the following commands setup all environment variables
>> correctly and load a subshell for you to debug the error:
>> (cd
>> '/Users/tcf/Applications/sage-6.7.rc0/local/var/tmp/sage/build/numpy-1.8.1.p0'
>>
>> && '/Users/tcf/Applications/sage-6.7.rc0/sage' --sh)
>> When you are done debugging, you can type "exit" to leave the subshell.
>> ************************************************************************
>>
>> On Friday, May 15, 2015 at 11:20:30 PM UTC-7, Dima Pasechnik wrote:
>>>
>>>
>>>
>>> On Saturday, 16 May 2015 02:06:32 UTC+1, Ted Fujimoto wrote:
>>>>
>>>> Just tried it but now having trouble with NumPy. Is this normal if I
>>>> already have NumPy installed (using Anaconda distribution)?:
>>>>
>>>
>>> The latter is probably OK.
>>> Well, it's hard to say without seeing the log what exactly went wrong.
>>>
>>>
>>>>
>>>> make[1]: *** [all] Error 2
>>>>
>>>> real 91m32.068s
>>>> user 259m40.279s
>>>> sys 33m41.236s
>>>> ***************************************************************
>>>> Error building Sage.
>>>>
>>>> The following package(s) may have failed to build:
>>>>
>>>> package: numpy-1.8.1.p0
>>>> log file:
>>>> /Users/tcf/Applications/sage-6.7.rc0/logs/pkgs/numpy-1.8.1.p0.log
>>>> build directory:
>>>> /Users/tcf/Applications/sage-6.7.rc0/local/var/tmp/sage/build/numpy-1.8.1.p0
>>>>
>>>> The build directory may contain configuration files and other
>>>> potentially
>>>> helpful information. WARNING: if you now run 'make' again, the build
>>>> directory will, by default, be deleted. Set the environment variable
>>>> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
>>>>
>>>> make: *** [build] Error 1
>>>>
>>>> On Friday, May 15, 2015 at 12:28:28 AM UTC-7, Volker Braun wrote:
>>>>>
>>>>> There were some changes to how we host the tarballs, get sage-6.7.rc0
>>>>> instead (which you need anyways to work around bugs in the newest xcode)
>>>>>
>>>>>
>>>>>
>>>>> On Friday, May 15, 2015 at 2:12:10 AM UTC+2, Ted Fujimoto wrote:
>>>>>>
>>>>>> Getting the following error using OS X 10.10:
>>>>>>
>>>>>> $ make -j8
>>>>>> ...
>>>>>> make base
>>>>>> /Users/tcf/Applications/sage/build/pipestatus "sage-spkg -f
>>>>>> bzip2-1.0.6.20140317 2>&1" "tee -a
>>>>>> /Users/tcf/Applications/sage/logs/pkgs/bzip2-1.0.6.20140317.log"
>>>>>> Found local metadata for bzip2-1.0.6.20140317
>>>>>> Attempting to download package bzip2-1.0.6.20140317
>>>>>> >>> Trying to download
>>>>>> http://www.sagemath.org/packages/upstream/bzip2/bzip2-1.0.6.20140317.tar.gz
>>>>>> [Traceback (most recent call last):
>>>>>> File "<stdin>", line 35, in <module>
>>>>>> File "/Users/tcf/Applications/sage/local/lib/python/urllib.py",
>>>>>> line 240, in retrieve
>>>>>> fp = self.open(url, data)
>>>>>> File "/Users/tcf/Applications/sage/local/lib/python/urllib.py",
>>>>>> line 208, in open
>>>>>> return getattr(self, name)(url)
>>>>>> File "/Users/tcf/Applications/sage/local/lib/python/urllib.py",
>>>>>> line 359, in open_http
>>>>>> return self.http_error(url, fp, errcode, errmsg, headers)
>>>>>> File "/Users/tcf/Applications/sage/local/lib/python/urllib.py",
>>>>>> line 376, in http_error
>>>>>> return self.http_error_default(url, fp, errcode, errmsg, headers)
>>>>>> File "<stdin>", line 17, in http_error_default
>>>>>> IOError: [Errno 404] Not Found: '//
>>>>>> www.sagemath.org/packages/upstream/bzip2/bzip2-1.0.6.20140317.tar.gz'
>>>>>> Error: failed to download package bzip2-1.0.6.20140317
>>>>>> make[2]: ***
>>>>>> [/Users/tcf/Applications/sage/local/var/lib/sage/installed/bzip2-1.0.6.20140317]
>>>>>>
>>>>>> Error 1
>>>>>> make[1]: *** [all] Error 2
>>>>>>
>>>>>> real 0m1.524s
>>>>>> user 0m0.415s
>>>>>> sys 0m0.255s
>>>>>> ***************************************************************
>>>>>> Error building Sage.
>>>>>>
>>>>>> The following package(s) may have failed to build:
>>>>>>
>>>>>> package: bzip2-1.0.6.20140317
>>>>>> log file:
>>>>>> /Users/tcf/Applications/sage/logs/pkgs/bzip2-1.0.6.20140317.log
>>>>>> build directory:
>>>>>> /Users/tcf/Applications/sage/local/var/tmp/sage/build/bzip2-1.0.6.20140317
>>>>>>
>>>>>> The build directory may contain configuration files and other
>>>>>> potentially
>>>>>> helpful information. WARNING: if you now run 'make' again, the build
>>>>>> directory will, by default, be deleted. Set the environment variable
>>>>>> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
>>>>>>
>>>>>> make: *** [build] Error 1
>>>>>>
>>>>>>
>>>>>>
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