Oh yes, this is Sage-6.10. Your system libstdc++.so is incompatible with
the one from gcc bundled in Sage. Starting with Sage-7 we don't use
LD_LIBRARY_PATH any more, this will solve your problem.
On Thursday, January 7, 2016 at 7:33:48 PM UTC+1, Robert Samal wrote:
>
> With pleasure!
>
> PATH's:
>
> samal@kamkoliv:~$ sage -sh -c env | grep PATH
> SAGE_ORIG_LD_LIBRARY_PATH_SET=True
> LIBRARY_PATH=/home/samal/local/SageMath/local/lib:/usr/lib/x86_64-linux-gnu
>
> SAGE_ORIG_PATH=/home/samal/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
>
> LD_LIBRARY_PATH=/home/samal/local/SageMath/local/lib:/home/samal/local/SageMath/local/lib64:/home/samal/local/SageMath/local/lib/R/lib
>
> CPATH=/home/samal/local/SageMath/local/include:/usr/include/x86_64-linux-gnu
> DEFAULTS_PATH=/usr/share/gconf/gnome.default.path
>
> PATH=/home/samal/local/SageMath/build/bin:/home/samal/local/SageMath/src/bin:/home/samal/local/SageMath/local/bin:/home/samal/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
> MANDATORY_PATH=/usr/share/gconf/gnome.mandatory.path
> SAGE_ORIG_PATH_SET=True
>
> PYTHONPATH=/home/samal/local/SageMath/local/lib/python:/home/samal/local/SageMath/local/lib/python/site_packages
> SAGE_ORIG_LD_LIBRARY_PATH=
> WINDOWPATH=2
> SINGULARPATH=/home/samal/local/SageMath/local/share/singular
> GIT_EXEC_PATH=/home/samal/local/SageMath/local/libexec/git-core
>
> linking:
>
> samal@kamkoliv:~$ sage -sh ldd /usr/bin/eog
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `CXXABI_1.3.9' not found (required by
> /usr/lib/x86_64-linux-gnu/libmirclient.so.9)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `GLIBCXX_3.4.21' not found (required by
> /usr/lib/x86_64-linux-gnu/libmirclient.so.9)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `CXXABI_1.3.9' not found (required by
> /usr/lib/x86_64-linux-gnu/libmircommon.so.5)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `GLIBCXX_3.4.21' not found (required by
> /usr/lib/x86_64-linux-gnu/libmircommon.so.5)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `CXXABI_1.3.9' not found (required by
> /usr/lib/x86_64-linux-gnu/libmirprotobuf.so.3)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `GLIBCXX_3.4.21' not found (required by
> /usr/lib/x86_64-linux-gnu/libmirprotobuf.so.3)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `GLIBCXX_3.4.21' not found (required by
> /usr/lib/x86_64-linux-gnu/libboost_system.so.1.58.0)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `GLIBCXX_3.4.21' not found (required by
> /usr/lib/x86_64-linux-gnu/libprotobuf-lite.so.9)
> /usr/bin/eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6:
> version `GLIBCXX_3.4.21' not found (required by
> /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.58.0)
> linux-vdso.so.1 => (0x00007ffe63d40000)
> libeog.so => /usr/lib/eog/libeog.so (0x00007f628d7f8000)
> libgtk-3.so.0 => /usr/lib/x86_64-linux-gnu/libgtk-3.so.0
> (0x00007f628cf08000)
> libgio-2.0.so.0 => /usr/lib/x86_64-linux-gnu/libgio-2.0.so.0
> (0x00007f628cb87000)
> libgirepository-1.0.so.1 =>
> /usr/lib/x86_64-linux-gnu/libgirepository-1.0.so.1 (0x00007f628c953000)
> libgobject-2.0.so.0 => /usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0
> (0x00007f628c700000)
> libglib-2.0.so.0 => /lib/x86_64-linux-gnu/libglib-2.0.so.0
> (0x00007f628c3f1000)
> libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
> (0x00007f628c1d3000)
> libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f628be09000)
> libgnome-desktop-3.so.10 =>
> /usr/lib/x86_64-linux-gnu/libgnome-desktop-3.so.10 (0x00007f628bbce000)
> libpeas-gtk-1.0.so.0 => /usr/lib64/libpeas-gtk-1.0.so.0
> (0x00007f628b9c0000)
> libgdk-3.so.0 => /usr/lib/x86_64-linux-gnu/libgdk-3.so.0
> (0x00007f628b6ec000)
> libatk-1.0.so.0 => /usr/lib/x86_64-linux-gnu/libatk-1.0.so.0
> (0x00007f628b4c7000)
> libpeas-1.0.so.0 => /usr/lib64/libpeas-1.0.so.0 (0x00007f628b2b2000)
> libexif.so.12 => /usr/lib/x86_64-linux-gnu/libexif.so.12
> (0x00007f628b06e000)
> liblcms2.so.2 => /usr/lib/x86_64-linux-gnu/liblcms2.so.2
> (0x00007f628ae17000)
> libexempi.so.3 => /usr/lib/x86_64-linux-gnu/libexempi.so.3
> (0x00007f628aadc000)
> librsvg-2.so.2 => /usr/lib/x86_64-linux-gnu/librsvg-2.so.2
> (0x00007f628a8a6000)
> libgdk_pixbuf-2.0.so.0 =>
> /usr/lib/x86_64-linux-gnu/libgdk_pixbuf-2.0.so.0 (0x00007f628a684000)
> libcairo.so.2 => /usr/lib/x86_64-linux-gnu/libcairo.so.2
> (0x00007f628a371000)
> libjpeg.so.8 => /usr/lib/x86_64-linux-gnu/libjpeg.so.8
> (0x00007f628a11c000)
> libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f6289e14000)
> libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6
> (0x00007f6289ada000)
> libz.so.1 => /home/samal/local/SageMath/local/lib/libz.so.1
> (0x00007f62898c0000)
> libgmodule-2.0.so.0 => /usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0
> (0x00007f62896bc000)
> libpangocairo-1.0.so.0 =>
> /usr/lib/x86_64-linux-gnu/libpangocairo-1.0.so.0 (0x00007f62894af000)
> libXi.so.6 => /usr/lib/x86_64-linux-gnu/libXi.so.6 (0x00007f628929f000)
> libXfixes.so.3 => /usr/lib/x86_64-linux-gnu/libXfixes.so.3
> (0x00007f6289099000)
> libcairo-gobject.so.2 =>
> /usr/lib/x86_64-linux-gnu/libcairo-gobject.so.2 (0x00007f6288e90000)
> libatk-bridge-2.0.so.0 =>
> /usr/lib/x86_64-linux-gnu/libatk-bridge-2.0.so.0 (0x00007f6288c61000)
> libepoxy.so.0 => /usr/lib/x86_64-linux-gnu/libepoxy.so.0
> (0x00007f628897b000)
> libpangoft2-1.0.so.0 => /usr/lib/x86_64-linux-gnu/libpangoft2-1.0.so.0
> (0x00007f6288765000)
> libpango-1.0.so.0 => /usr/lib/x86_64-linux-gnu/libpango-1.0.so.0
> (0x00007f6288517000)
> libfontconfig.so.1 => /usr/lib/x86_64-linux-gnu/libfontconfig.so.1
> (0x00007f62882d9000)
> libselinux.so.1 => /lib/x86_64-linux-gnu/libselinux.so.1
> (0x00007f62880b5000)
> libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2
> (0x00007f6287e99000)
> libffi.so.6 => /usr/lib/x86_64-linux-gnu/libffi.so.6
> (0x00007f6287c91000)
> libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3 (0x00007f6287a24000)
> /lib64/ld-linux-x86-64.so.2 (0x00007f628da6e000)
> librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f628781c000)
> libXinerama.so.1 => /usr/lib/x86_64-linux-gnu/libXinerama.so.1
> (0x00007f6287619000)
> libXrandr.so.2 => /usr/lib/x86_64-linux-gnu/libXrandr.so.2
> (0x00007f628740e000)
> libXcursor.so.1 => /usr/lib/x86_64-linux-gnu/libXcursor.so.1
> (0x00007f6287204000)
> libXcomposite.so.1 => /usr/lib/x86_64-linux-gnu/libXcomposite.so.1
> (0x00007f6287001000)
> libXdamage.so.1 => /usr/lib/x86_64-linux-gnu/libXdamage.so.1
> (0x00007f6286dfe000)
> libxkbcommon.so.0 => /usr/lib/x86_64-linux-gnu/libxkbcommon.so.0
> (0x00007f6286bbf000)
> libwayland-cursor.so.0 =>
> /usr/lib/x86_64-linux-gnu/libwayland-cursor.so.0 (0x00007f62869b7000)
> libwayland-egl.so.1 => /usr/lib/x86_64-linux-gnu/libwayland-egl.so.1
> (0x00007f62867b5000)
> libwayland-client.so.0 =>
> /usr/lib/x86_64-linux-gnu/libwayland-client.so.0 (0x00007f62865a7000)
> libmirclient.so.9 => /usr/lib/x86_64-linux-gnu/libmirclient.so.9
> (0x00007f6286322000)
> libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6
> (0x00007f6286110000)
> libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1
> (0x00007f6285ee7000)
> libstdc++.so.6 =>
> /home/samal/local/SageMath/local/lib64/libstdc++.so.6 (0x00007f6285bdd000)
> libgcc_s.so.1 => /home/samal/local/SageMath/local/lib64/libgcc_s.so.1
> (0x00007f62859c7000)
> libcroco-0.6.so.3 => /usr/lib/x86_64-linux-gnu/libcroco-0.6.so.3
> (0x00007f628578c000)
> libxml2.so.2 => /usr/lib/x86_64-linux-gnu/libxml2.so.2
> (0x00007f62853d4000)
> libpixman-1.so.0 => /usr/lib/x86_64-linux-gnu/libpixman-1.so.0
> (0x00007f6285127000)
> libfreetype.so.6 =>
> /home/samal/local/SageMath/local/lib/libfreetype.so.6 (0x00007f6284e90000)
> libpng12.so.0 => /home/samal/local/SageMath/local/lib/libpng12.so.0
> (0x00007f6284c6b000)
> libxcb-shm.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-shm.so.0
> (0x00007f6284a67000)
> libxcb-render.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-render.so.0
> (0x00007f628485d000)
> libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1
> (0x00007f628463c000)
> libXrender.so.1 => /usr/lib/x86_64-linux-gnu/libXrender.so.1
> (0x00007f6284432000)
> libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f628422e000)
> libatspi.so.0 => /usr/lib/x86_64-linux-gnu/libatspi.so.0
> (0x00007f6283ffd000)
> libdbus-1.so.3 => /lib/x86_64-linux-gnu/libdbus-1.so.3
> (0x00007f6283db1000)
> libharfbuzz.so.0 => /usr/lib/x86_64-linux-gnu/libharfbuzz.so.0
> (0x00007f6283b53000)
> libthai.so.0 => /usr/lib/x86_64-linux-gnu/libthai.so.0
> (0x00007f628394a000)
> libmircommon.so.5 => /usr/lib/x86_64-linux-gnu/libmircommon.so.5
> (0x00007f628370c000)
> libmirprotobuf.so.3 => /usr/lib/x86_64-linux-gnu/libmirprotobuf.so.3
> (0x00007f62834b1000)
> libboost_system.so.1.58.0 =>
> /usr/lib/x86_64-linux-gnu/libboost_system.so.1.58.0 (0x00007f62832ad000)
> libprotobuf-lite.so.9 =>
> /usr/lib/x86_64-linux-gnu/libprotobuf-lite.so.9 (0x00007f628307c000)
> libicuuc.so.55 => /usr/lib/x86_64-linux-gnu/libicuuc.so.55
> (0x00007f6282ce8000)
> libbz2.so.1 => /home/samal/local/SageMath/local/lib/libbz2.so.1
> (0x00007f6282ad8000)
> libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6
> (0x00007f62828d4000)
> libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6
> (0x00007f62826ce000)
> libsystemd.so.0 => /lib/x86_64-linux-gnu/libsystemd.so.0
> (0x00007f628dbca000)
> libgraphite2.so.3 => /usr/lib/x86_64-linux-gnu/libgraphite2.so.3
> (0x00007f62824b2000)
> libdatrie.so.1 => /usr/lib/x86_64-linux-gnu/libdatrie.so.1
> (0x00007f62822ab000)
> libboost_filesystem.so.1.58.0 =>
> /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.58.0 (0x00007f6282093000)
> libicudata.so.55 => /usr/lib/x86_64-linux-gnu/libicudata.so.55
> (0x00007f62805dc000)
> liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007f62803ba000)
> libgcrypt.so.20 => /lib/x86_64-linux-gnu/libgcrypt.so.20
> (0x00007f62800d8000)
> libgpg-error.so.0 => /lib/x86_64-linux-gnu/libgpg-error.so.0
> (0x00007f627fec5000)
>
>
> On Thursday, January 7, 2016 at 6:38:53 PM UTC+1, Volker Braun wrote:
>>
>> Can you tell us more about what eog links to?
>>
>> $ sage -sh command -v eog
>> /usr/bin/eog
>> $ sage -sh ldd /usr/bin/eog # adjust path as necessary
>>
>> Also, are you overriding some paths?
>>
>> $ sage -sh -c env | grep PATH
>>
>>
>>
>> On Thursday, January 7, 2016 at 5:35:00 PM UTC+1, Robert Samal wrote:
>>>
>>>
>>> On Thursday, January 7, 2016 at 5:16:38 PM UTC+1, Volker Braun wrote:
>>>>
>>>> What happens if you try to launch the viewer in a sage shell?
>>>>
>>>> sage -sh xdg-open /path/to/image.png
>>>>
>>>
>>> Good idea, didn't thought of that. I get some informative error messages
>>> (see below).
>>> I may try to work it out from here, but if it is a bug that can bite
>>> more people than just me (as opposed to a messy installation on my laptop),
>>> it's probably worth if somebody knowledgeable could spell out, what is the
>>> issue exactly.
>>>
>>> Here is the output:
>>>
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `CXXABI_1.3.9' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libmirclient.so.9)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `GLIBCXX_3.4.21' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libmirclient.so.9)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `CXXABI_1.3.9' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libmircommon.so.5)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `GLIBCXX_3.4.21' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libmircommon.so.5)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `CXXABI_1.3.9' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libmirprotobuf.so.3)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `GLIBCXX_3.4.21' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libmirprotobuf.so.3)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `GLIBCXX_3.4.21' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libboost_system.so.1.58.0)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `GLIBCXX_3.4.21' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libprotobuf-lite.so.9)
>>> eog: /home/samal/local/SageMath/local/lib64/libstdc++.so.6: version
>>> `GLIBCXX_3.4.21' not found (required by
>>> /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.58.0)
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>>>
>>>> On Thursday, January 7, 2016 at 4:49:44 PM UTC+1, Robert Samal wrote:
>>>>>
>>>>> Hi,
>>>>>
>>>>> during some recent update of my laptop, sage ceased to show pictures
>>>>> from command-line.
>>>>> That is, for instance:
>>>>>
>>>>> sage: plot(x^2, [x,0,1])
>>>>> Yields output
>>>>> "Launched png viewer for Graphics object consisting of 1 graphics
>>>>> primitive"
>>>>>
>>>>> Except no png viewer is launched (it used to start external
>>>>> image-viewer).
>>>>>
>>>>> The png-files are properly created in the appropriate tmp folder.
>>>>>
>>>>> Also starting pdf viewer works:
>>>>> sage: view(x^2)
>>>>> ... starts a pdf viewer with x^2 typeset in tex.
>>>>>
>>>>> I tried to check the viewer and everything seems to be OK:
>>>>> sage: from sage.misc.viewer import viewer
>>>>> sage: viewer('pdf')
>>>>> 'xdg-open'
>>>>> sage: viewer('png')
>>>>> 'xdg-open'
>>>>>
>>>>> And, when I try xdg-open in a shell (i.e., outside of sage), then it
>>>>> open correctly both png and pdf files.
>>>>>
>>>>> Any ideas? It starts to be quite annoying (the only workaround I found
>>>>> is to save the plot to a png ...).
>>>>>
>>>>> My system is ubuntu 15.10,
>>>>> SageMath Version 6.10, Release Date: 2015-12-18 -- obtained from file
>>>>> sage-6.10-Ubuntu_15.10-x86_64.tar.bz2.
>>>>>
>>>>> But it did not work with sage 6.8 and 6.7 either. I'm not sure but I
>>>>> believe it worked with ubuntu 15.04 (and some previous version of sage).
>>>>>
>>>>> Thanks in advance for any suggestion,
>>>>>
>>>>> Robert Samal
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
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