You can run the script with your system python directly in your Sage
directory, e.g.:
$ python
Python 2.7.11 (default, Mar 31 2016, 20:46:51)
[GCC 5.3.1 20151207 (Red Hat 5.3.1-2)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import sys
>>> sys.path.append('src')
>>> from sage_setup.find import find_extra_files
>>> find_extra_files(["sage.combinat"], 'src', 'src/build/cythonized', '.')
[('./sage/combinat', ['src/sage/combinat/combinat_cython.pxd',
'src/sage/combinat/enumeration_mod_permgroup.pxd',
'src/sage/combinat/permutation_cython.pxd',
'src/build/cythonized/sage/combinat/partitions_c.h'])]
On Monday, May 30, 2016 at 2:57:41 AM UTC+2, paulmasson wrote:
>
> Volker, the line you have in logs/install.log does not exist for me when
> the build halts. Just this:
>
> $ egrep -r partitions_c.h logs/install.log
>
> logs/install.log:/Users/Masson/downloads/github/sage/src/build/cythonized/
> sage/combinat/partitions.cpp:323:26: fatal error: partitions_c.h: No such
> file or directory
>
> logs/install.log: #include "partitions_c.h"
>
> I'll save a copy of the install log at the point of halting if you want
> that as well.
>
> There is no sagelib7.3-beta*.log when the build halts. Attaching
> sagelib-7.2.log instead if that helps.
>
> When the build halts I cannot run Sage to give you the other output. In
> the working version of 7.2, the output of the indicated commands is exactly
> the same as yours, but that is because I manually made sure the missing
> files were put in place.
>
> These nine files are just not getting copied during the build on my
> machine.
>
>
> On Sunday, May 29, 2016 at 4:11:41 PM UTC-7, Volker Braun wrote:
>>
>> These are copied during the build process:
>>
>> $ egrep -r partitions_c.h logs/install.log
>> copying
>> /home/vbraun/Sage/git-develop/src/build/cythonized/sage/combinat/partitions_c.h
>>
>> ->
>> /home/vbraun/Sage/git-develop/local/lib/python2.7/site-packages/sage/combinat
>>
>> Can you post your logs/pkgs/sagelib-7.3.beta2.log and whats the output of
>>
>> sage: from sage_setup.find import find_extra_files
>> sage: from sage.env import SAGE_SRC, SAGE_CYTHONIZED
>> sage: find_extra_files(["sage.combinat"], SAGE_SRC, SAGE_CYTHONIZED, ".")
>> [('./sage/combinat',
>> ['/home/vbraun/Code/sage/src/sage/combinat/combinat_cython.pxd',
>>
>> '/home/vbraun/Code/sage/src/sage/combinat/enumeration_mod_permgroup.pxd',
>> '/home/vbraun/Code/sage/src/sage/combinat/permutation_cython.pxd',
>>
>>
>> '/home/vbraun/Code/sage/src/build/cythonized/sage/combinat/partitions_c.h'])]
>>
>>
>>
>> On Monday, May 30, 2016 at 12:02:31 AM UTC+2, paulmasson wrote:
>>>
>>> Turns out this issue has nothing to do with the Github copy. I
>>> downloaded a 7.2 tarball and had the same issue a total of nine times. Here
>>> are the successive error messages:
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/combinat/partitions.cpp:323:26:
>>>
>>> fatal error: partitions_c.h: No such file or directory
>>>
>>> #include "partitions_c.h"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/combinat/matrices/dancing_links.cpp:319:29:
>>>
>>> fatal error: dancing_links_c.h: No such file or directory
>>>
>>> #include "dancing_links_c.h"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/graphs/base/boost_graph.cpp:314:31:
>>>
>>> fatal error: boost_interface.cpp: No such file or directory
>>>
>>> #include "boost_interface.cpp"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/libs/ecl.c:324:20:
>>> fatal error: eclsig.h: No such file or directory
>>>
>>> #include "eclsig.h"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/libs/ppl.cpp:336:23:
>>> fatal error: ppl_shim.hh: No such file or directory
>>>
>>> #include "ppl_shim.hh"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/libs/eclib/mwrank.cpp:356:20:
>>>
>>> fatal error: wrap.cpp: No such file or directory
>>>
>>> #include "wrap.cpp"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/matroids/matroid.c:296:22:
>>>
>>> fatal error: minorfix.h: No such file or directory
>>>
>>> #include "minorfix.h"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/misc/darwin_utilities.c:290:33:
>>>
>>> fatal error: darwin_memory_usage.h: No such file or directory
>>>
>>> #include "darwin_memory_usage.h"
>>>
>>> /Users/Masson/desktop/sage/src/build/cythonized/sage/symbolic/pynac.cpp:334:22:
>>>
>>> fatal error: pynac_cc.h: No such file or directory
>>>
>>> #include "pynac_cc.h"
>>>
>>> After each failed build I manually copied each missing file to the
>>> appropriate directory and ran 'make' again. I now have a running build of
>>> 7.2. Yippee!
>>>
>>> A friend has suggested that the errors might be caused by bad line
>>> endings that only show up on a Mac. Any other explanations for such
>>> apparently random behavior?
>>>
>>>
>>> On Saturday, May 28, 2016 at 5:55:04 PM UTC-7, paulmasson wrote:
>>>>
>>>> Running OS X El Capitan on a year-old Macbook.
>>>>
>>>> Deleted my entire Sage directory. Did a clean clone from
>>>> github.com/sagemath/sage.git. Immediately changed to Sage directory
>>>> and ran make. Same error as previously:
>>>>
>>>> error: command 'gcc' failed with exit status 1
>>>>
>>>> /Users/Masson/downloads/github/sage/src/build/cythonized/sage/combinat/partitions.cpp:323:26:
>>>>
>>>> fatal error: partitions_c.h: No such file or directory
>>>>
>>>> #include "partitions_c.h"
>>>>
>>>> ^
>>>>
>>>> compilation terminated.
>>>>
>>>> make[3]: *** [sage] Error 1
>>>>
>>>>
>>>> Is there a problem building from the github copy?
>>>>
>>>
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