Sage has no interface to any persistent homology software. Please write one!

-- 
John


On Friday, May 12, 2017 at 4:20:14 AM UTC-7, Dima Pasechnik wrote:
>
>
>
> On Friday, May 12, 2017 at 9:49:20 AM UTC+1, Pierre wrote:
>>
>> Is there any interface between Sage and persistent homology software? For 
>> example this:
>>
>> http://gudhi.gforge.inria.fr/
>>
>>
>> or this:
>>
>>
>> http://mrzv.org/software/dionysus/index.html
>>
>>
>> (Older threads here or on sage-devel seemed to indicate that the answer was 
>> "no", but they're quite old.)
>>
>>
>> Incidentally, if anybody has managed to install GUDHI either on Mac OSX or 
>> on SMC, i'd be interested to know how this was achieved.
>>
>>
>> Thanks!
>>
>>
> thanks for the links. Last time I looked into it a couple of years ago, 
> the software landscape in this area consisted of some closed-source efforts 
> mostly. It's great these two can be used easily now.
> (it's perhaps telling that dionysus only got its GPL license a month ago 
> :-))
>
> The only related effort that has some connection to Sage is Kenzo (
> https://github.com/gheber/kenzo), which has a persistent homology 
> computation package; more precisely, it can compute persistent homology 
> groups, which are basically reincarnation of groups in Leray spectral 
> sequence (cf https://arxiv.org/abs/1308.0801).
> (I don't know what the exact status of Kenzo in Sage is ATM)
>
> Dima
>
>>
>>

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