Hi Paul,
let me mention that there is a "sage sample project":   
https://github.com/sagemath/sage_sample#documentation
which you may use. although in that project, it is implicit that you have 
.py files (instead of .sage files). 
some indications are given in this FAQ:
http://doc.sagemath.org/html/en/faq/faq-contribute.html#i-wrote-some-sage-code-and-i-want-it-to-be-integrated-into-sage-however-after-renaming-my-file-a-sage-to-a-py-i-got-syntax-errors-do-i-have-to-rewrite-all-my-code-in-python-instead-of-sage

El domingo, 28 de mayo de 2017, 14:33:46 (UTC+2), Paul Leopardi escribió:
>
> Hello,
> I am trying to create HTML documentation for my Boolean-Cayley-graphs 
> project ( https://github.com/penguian/Boolean-Cayley-graphs ) that uses 
> Sage.
> If I try to just use Sphinx, following the instructions at 
> https://codeandchaos.wordpress.com/2012/07/30/sphinx-autodoc-tutorial-for-dummies/
>  
> it is no clear to me how to tell Sphinx where to find everything in Sage 
> that it might need to import.
>
> The Sage documentation itself says how to generate the Sage manuals ( 
> http://doc.sagemath.org/html/en/developer/sage_manuals.html ).
> I can't find anything that says how to generate documentation for code 
> that uses Sage without incorporating that code into Sage proper.
>
> I need step by step instructions, with examples. Do these exist somewhere? 
> Have I overlooked something? Or is it just assumed that I should fork Sage 
> itself and incorporate my code there, just so that I can generate 
> documentation?
> All the best, Paul
>
>

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