Thanks! Will try Monday! On Mon, Jan 28, 2019 at 02:15 Dima Pasechnik <[email protected]> wrote:
> Two copies of libfortran with different version numbers seem to indicate > two different versions of gfortran (and GCC) on your machine. You might > like to explicitly tell sage which one you want to use, the newer ones, > something like > > ./configure CC=gcc7 CXX=g++7 FC=gfortran7 > > And then rebuild from scratch... > > On Mon, 28 Jan 2019 04:32 Ike Stoddard <[email protected] wrote: > >> Scenario: building sage 8.6 from source. >> Build seems to want to make scipy-1.1.0. >> Final results were: >> Error building Sage. >> >> The following package(s) may have failed to build (not necessarily >> during this run of 'make all-start'): >> >> * package: scipy-1.1.0 >> log file: /usr/local/src/Misc/sage-8.6/logs/pkgs/scipy-1.1.0.log >> build directory: >> /usr/local/src/Misc/sage-8.6/local/var/tmp/sage/build/scipy-1.1.0 >> >> The build directory may contain configuration files and other potentially >> helpful information. WARNING: if you now run 'make' again, the build >> directory will, by default, be deleted. Set the environment variable >> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >> >> make[1]: *** [all-start] Error 1 >> make[1]: Leaving directory `/usr/local/src/Misc/sage-8.6' >> make: *** [all] Error 2 >> >> Examine log file and notice: >> Original error was: libgfortran.so.3: cannot open shared object file: No >> such file or directory >> >> But examination to find this shows >> >>> *locate libgfortran.so.* >> /usr/lib/libgfortran.so.5 >> /usr/lib/libgfortran.so.5.0.0 >> /usr/lib/gcc/x86_64-pc-linux-gnu/5.5.0/libgfortran.so.3 >> /usr/lib/gcc/x86_64-pc-linux-gnu/5.5.0/libgfortran.so.3.0.0 >> /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.1/libgfortran.so.3 >> /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.1/libgfortran.so.3.0.0 >> /usr/lib32/libgfortran.so.5 >> /usr/lib32/libgfortran.so.5.0.0 >> >> Trying subshell method: >> /usr/local/src/Misc/sage-8.6> (*cd >> '/usr/local/src/Misc/sage-8.6/local/var/tmp/sage/build/scipy-1.1.0' && >> '/usr/local/src/Misc/sage-8.6/sage' --sh)* >> >> Starting subshell with Sage environment variables set. Don't forget >> to exit when you are done. Beware: >> * Do not do anything with other copies of Sage on your system. >> * Do not use this for installing Sage packages using "sage -i" or for >> running "make" at Sage's root directory. These should be done >> outside the Sage shell. >> >> Bypassing shell configuration files... >> >> Note: SAGE_ROOT=/usr/local/src/Misc/sage-8.6 >> (sage-sh) isaac@Light1DAW:scipy-1.1.0$ *pip install scipy* >> Collecting scipy >> Downloading >> https://files.pythonhosted.org/packages/45/d1/7c2b33a5daee3d67752d043fe7e1476c4465788b0b6e59367fd71fdf684a/scipy-1.2.0-cp27-cp27mu-manylinux1_x86_64.whl >> (26.6MB) >> ... >> Requirement already satisfied: numpy>=1.8.2 in >> /usr/local/src/Misc/sage-8.6/local/lib/python2.7/site-packages (from scipy) >> (1.15.4) >> Installing collected packages: scipy >> Successfully installed scipy-1.2.0 >> (sage-sh) isaac@Light1DAW:scipy-1.1.0$ *exit* >> exit >> >> It hints that numpy needs reinstalling ** inside the install shell ** . >> I am at a loss as to how to proceed. I will attach the log file. >> Please help? Consider that I am a sysadmin but lost. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-support" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/sage-support. >> For more options, visit https://groups.google.com/d/optout. >> > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/sage-support. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/sage-support. For more options, visit https://groups.google.com/d/optout.
