Hi Dima, I am building locally, as this is a university cluster and I only have access to my local directories.
Unfortunately, this did not resolve the issue and this line was added to my output: [sqlite-3270100] configure: WARNING: unrecognized options: --disable-maintainer-mode In the log file, it still has this as the last error: configure: error: in `/scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100/src': configure: error: C compiler cannot create executables Best, Kash On Tue, Mar 24, 2020 at 7:53 AM Dima Pasechnik <[email protected]> wrote: > On Tue, Mar 24, 2020 at 4:51 PM Kashif Bari <[email protected]> wrote: > > > > I believe I was able to resolve the issue with mpc-1.1.0 by loading a > more recent version of the texinfo package! Hopefully others who have this > issue will be able to resolve it similarly. > > > > However, I ended up running into this issue when running make again: > > > > Error building Sage. > > > > The following package(s) may have failed to build (not necessarily > > during this run of 'make all-start'): > > > > * package: sqlite-3270100 > > log file: /scratch/user/kbari/sage-8.9/logs/pkgs/sqlite-3270100.log > > build directory: > /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100 > > > > The build directory may contain configuration files and other potentially > > helpful information. WARNING: if you now run 'make' again, the build > > directory will, by default, be deleted. Set the environment variable > > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. > > > > make: *** [all-start] Error 1 > > > > this is a familiar problem, due to skew clocks on your system, I suppose. > Is /scratch/ a local filesystem? If not, you'd better try building on > a local filesystem. > (the problem is that sq > In the upcoming release one should be able to use sqlite from the system, > thanks to https://trac.sagemath.org/ticket/29002 > > One way around this should be to change the line > > sdh_configure > > near the bottom of build/pkgs/sqlite/spkg-install > > to be > > sdh_configure --disable-maintainer-mode > > and try again running make again. > > (This change should make sqlite's ./configure less sensitive to skew clock) > > HTH, > Dima > > > > > It seems CentOS doesn't like when I install Sage! Thank you all once > again for all your helpful comments! > > > > On Wed, Mar 18, 2020 at 11:33 PM Dima Pasechnik <[email protected]> > wrote: > >> > >> On Thu, Mar 19, 2020 at 12:25 PM Kashif Bari <[email protected]> > wrote: > >> > > >> > Thank you, Dima, I was able to load the texinfo package before I did > make and I believe this resolved my issue with mpfr. However, I ran into > the same issue with mpc-1.1.0 now instead of mpfr. > >> > >> hmm, the same? If you have now makeinfo installed, it should be a > >> different issue. > >> > >> > > >> > I currently have sage 8.9 installed on my personal laptop, so I > figured I would stick with the same version that I know my code runs on. > >> > > >> > On Wed, Mar 18, 2020 at 9:56 PM Dima Pasechnik <[email protected]> > wrote: > >> >> > >> >> mpfr needs makeinfo program to be installed. This is a pretty > standard thing, > >> >> which on Centos is in texinfo package > >> >> > https://centos.pkgs.org/7/centos-x86_64/texinfo-5.1-5.el7.x86_64.rpm.html > >> >> > >> >> > >> >> By the way, why are you building Sage 8.9, and not 9.0? > >> >> > >> >> On Thu, Mar 19, 2020 at 7:00 AM Kashif Bari <[email protected]> > wrote: > >> >> > > >> >> > I am trying to install Sage version 8.9 on the High performance > cluster at my university, which runs Linux (CentOS 7). I am installing to > my local "scratch" folder since I do not have administrative permissions. I > am trying to install from source code as the pre-built binaries are for > Ubuntu and Debian and did not work for me and I was unsure if they would > work on CentOS 7. I was able to run ./configure without any issues and then > when i did make, I received the following log file (attached) and error: > >> >> > > >> >> > Error building Sage. > >> >> > > >> >> > The following package(s) may have failed to build (not necessarily > >> >> > during this run of 'make all-start'): > >> >> > > >> >> > * package: mpfr-4.0.1.p0 > >> >> > log file: > /scratch/user/kbari/sage-8.9/logs/pkgs/mpfr-4.0.1.p0.log > >> >> > build directory: > /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/mpfr-4.0.1.p0 > >> >> > > >> >> > The build directory may contain configuration files and other > potentially > >> >> > helpful information. WARNING: if you now run 'make' again, the > build > >> >> > directory will, by default, be deleted. Set the environment > variable > >> >> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. > >> >> > > >> >> > make[1]: *** [all-start] Error 1 > >> >> > make[1]: Leaving directory `/scratch/user/kbari/sage-8.9' > >> >> > make: *** [all] Error 2 > >> >> > > >> >> > > >> >> > I have tried to contact the help and support for the cluster, but > they do not know much about Sage. Any help would be greatly appreciated! > Thank you for your time! > >> >> > > >> >> > -- > >> >> > You received this message because you are subscribed to the Google > Groups "sage-support" group. > >> >> > To unsubscribe from this group and stop receiving emails from it, > send an email to [email protected]. > >> >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/9d94553b-f5b0-435b-93c5-7724c3422cc3%40googlegroups.com > . > >> >> > >> >> -- > >> >> You received this message because you are subscribed to the Google > Groups "sage-support" group. > >> >> To unsubscribe from this group and stop receiving emails from it, > send an email to [email protected]. > >> >> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAAWYfq0p1Z5t8KZmWvPqdqstOS77eaLveTs5w8qsOXp6EwK67w%40mail.gmail.com > . > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-support" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to [email protected]. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAJoD6MJFKbvovOSj_zLpBohUPtaPFYP%3Dpx8XKza5Lhb%2ByAiqFA%40mail.gmail.com > . > >> > >> -- > >> You received this message because you are subscribed to the Google > Groups "sage-support" group. > >> To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > >> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAAWYfq1iCUYRzukvrD95DKgg%3DtJhLoDHcDEmZiddwG%2BGADCDgg%40mail.gmail.com > . > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-support" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAJoD6M%2BXkyeCsj9wpgCfVXU52YMoOrLUMZ1Je4F7in4orW1iqw%40mail.gmail.com > . > > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAAWYfq31HJwhzkzSwAVzG32d_ahfPARm%3DHja41ze%3D3yxC5F10w%40mail.gmail.com > . > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/CAJoD6MLgEfp_0WHwA2GpQykbMoij5UUi-nyeYvDwmbTfe6CJZg%40mail.gmail.com.
