#4372: [with patch, needs work] Repair to totallyreal_dsage
---------------------------+------------------------------------------------
Reporter: jvoight | Owner: was
Type: defect | Status: new
Priority: minor | Milestone: sage-3.2.2
Component: number theory | Resolution:
Keywords: |
---------------------------+------------------------------------------------
Changes (by was):
* summary: [with patch, needs review] Repair to totallyreal_dsage =>
[with patch, needs work] Repair to
totallyreal_dsage
Comment:
REFEREE:
I applied the first two patches no problem to 3.2.1.alpha2. The third
patch fails to apply:
{{{
sage:
hg_sage.apply('http://trac.sagemath.org/sage_trac/attachment/ticket/4372/10737.patch')
Attempting to load remote file:
http://trac.sagemath.org/sage_trac/attachment/ticket/4372/10737.patch?format=raw
Loading: [.]
cd "/home/was/build/sage-3.2.1.alpha1/devel/sage" && hg status
cd "/home/was/build/sage-3.2.1.alpha1/devel/sage" && hg status
cd "/home/was/build/sage-3.2.1.alpha1/devel/sage" && hg import
"/home/was/.sage/temp/sage/25372/tmp_2.patch"
applying /home/was/.sage/temp/sage/25372/tmp_2.patch
patching file sage/rings/number_field/totallyreal_dsage.py
Hunk #1 FAILED at 296
1 out of 1 hunk FAILED -- saving rejects to file
sage/rings/number_field/totallyreal_dsage.py.rej
abort: patch failed to apply
---
[EMAIL PROTECTED]:~/build/sage-3.2.1.alpha1$ more
devel/sage/sage/rings/number_field/totallyreal_dsage.py.rej
--- totallyreal_dsage.py
+++ totallyreal_dsage.py
@@ -297,7 +297,7 @@
# Add the timings.
self.cputime += job[1].cpu_time
- self.walltime += job[1].wall_time
+ self.walltime += job[1].wall_time.seconds
if write_result:
fsock = open(filename_start +
str(job[0]).replace(' ','') + '.out', 'w')
}}}
Looks easy to fix... so I fix it. No problem.
I then enable doctesting and try the tests, but they totally hang in line
60:
{{{
Trying:
dsage.worker()###line 60:_sage_ >>> dsage.worker()
Expecting:
[...]
2008-11-28 17:54:57-0800 [-] Log opened.
2008-11-28 17:54:57-0800 [-] Log opened.
2008-11-28 17:54:57-0800 [-] Logging to file:
/home/was/.sage/dsage/worker.log
2008-11-28 17:54:57-0800 [-] Starting factory
<sage.dsage.twisted.pb.ClientFactory instance at 0x2aab35eaa710>
2008-11-28 17:54:57-0800 [-]
==================================================
2008-11-28 17:54:57-0800 [-] DSAGE Worker
2008-11-28 17:54:57-0800 [-] Started with PID: 25788
2008-11-28 17:54:57-0800 [-] Connecting to localhost:8081
2008-11-28 17:54:57-0800 [-] Using SSL: True
2008-11-28 17:54:57-0800 [-]
==================================================
2008-11-28 17:54:57-0800 [Uninitialized]
<gnutls.interfaces.twisted.TLSConnector instance at 0x2aab35eaa830> will
retry in 2 seconds
2008-11-28 17:54:57-0800 [Uninitialized] Stopping factory
<sage.dsage.twisted.pb.ClientFactory instance at 0x2aab35eaa710>
2008-11-28 17:55:00-0800 [-] Starting factory
<sage.dsage.twisted.pb.ClientFactory instance at 0x2aab35eaa710>
2008-11-28 17:55:00-0800 [Uninitialized]
<gnutls.interfaces.twisted.TLSConnector instance at 0x2aab35eaa830> will
retry in 7 seconds
2008-11-28 17:55:00-0800 [Uninitialized] Stopping factory
<sage.dsage.twisted.pb.ClientFactory instance at 0x2aab35eaa710>
2008-11-28 17:55:07-0800 [-] Starting factory
<sage.dsage.twisted.pb.ClientFactory instance at 0x2aab35eaa710>
2008-11-28 17:55:07-0800 [Uninitialized]
<gnutls.interfaces.twisted.TLSConnector instance at 0x2aab35eaa830> will
retry in 22 seconds
2008-11-28 17:55:07-0800 [Uninitialized] Stopping factory
<sage.dsage.twisted.pb.ClientFactory instance at 0x2aab35eaa710>
[waited 20 minutes and it is stuck hard]
}}}
I delete ~/.sage/dsage and try again. Doctesting finishes with some
errors:
{{{
[EMAIL PROTECTED]:~/build/sage-3.2.1.alpha1$ ./sage -t
devel/sage/sage/rings/number_field/totallyreal_dsage.py
sage -t devel/sage/sage/rings/number_field/totallyreal_dsage.pyGoing into
testing mode...
Adding testing client...
2008-11-28 18:12:33-0800 [-] Log opened.
2008-11-28 18:12:33-0800 [-] Log opened.
2008-11-28 18:12:33-0800 [-] Logging to file:
/home/was/.sage/dsage/worker.log
2008-11-28 18:12:33-0800 [-] Traceback (most recent call last):
2008-11-28 18:12:33-0800 [-] File
"/home/was/build/sage-3.2.1.alpha1/local/bin/dsage_worker.py", line 1039,
in <module>
2008-11-28 18:12:33-0800 [-] main()
2008-11-28 18:12:33-0800 [-] File
"/home/was/build/sage-3.2.1.alpha1/local/bin/dsage_worker.py", line 1026,
in main
2008-11-28 18:12:33-0800 [-] privkey_file=options.privkey_file)
2008-11-28 18:12:33-0800 [-] File
"/home/was/build/sage-3.2.1.alpha1/local/bin/dsage_worker.py", line 734,
in __init__
2008-11-28 18:12:33-0800 [-] self.pubkey =
keys.Key.fromFile(self.pubkey_file)
2008-11-28 18:12:33-0800 [-] File
"/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/conch/ssh/keys.py",
line 60, in fromFile
2008-11-28 18:12:33-0800 [-] return Class.fromString(file(filename,
'rb').read(), type, passphrase)
2008-11-28 18:12:33-0800 [-] IOError: [Errno 2] No such file or directory:
'/home/was/.sage/dsage/dsage_key.pub'
**********************************************************************
File
"/home/was/build/sage-3.2.1.alpha1/devel/sage/sage/rings/number_field/totallyreal_dsage.py",
line 51:
sage: dsage.setup_all()
Exception raised:
Traceback (most recent call last):
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/sagedoctest.py",
line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_1[2]>", line 1, in <module>
dsage.setup_all()###line 51:
sage: dsage.setup_all()
AttributeError: 'DistributedSage' object has no attribute 'setup_all'
**********************************************************************
File
"/home/was/build/sage-3.2.1.alpha1/devel/sage/sage/rings/number_field/totallyreal_dsage.py",
line 53:
sage: dsage.server()
Expected:
[...]
Got:
Going into testing mode...
**********************************************************************
File
"/home/was/build/sage-3.2.1.alpha1/devel/sage/sage/rings/number_field/totallyreal_dsage.py",
line 58:
sage: dsage.setup_worker()
Expected:
[...]
Got:
Worker configuration finished.
<BLANKLINE>
**********************************************************************
File
"/home/was/build/sage-3.2.1.alpha1/devel/sage/sage/rings/number_field/totallyreal_dsage.py",
line 60:
sage: dsage.worker()
Expected:
[...]
Got nothing
**********************************************************************
File
"/home/was/build/sage-3.2.1.alpha1/devel/sage/sage/rings/number_field/totallyreal_dsage.py",
line 65:
sage: Dtr = totallyreal_dsage()
Exception raised:
Traceback (most recent call last):
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/sagedoctest.py",
line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_1[6]>", line 1, in <module>
Dtr = totallyreal_dsage()###line 65:
sage: Dtr = totallyreal_dsage()
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/sage/rings/number_field/totallyreal_dsage.py", line 69, in
__init__
self.D = DSage()
NameError: global name 'DSage' is not defined
**********************************************************************
File
"/home/was/build/sage-3.2.1.alpha1/devel/sage/sage/rings/number_field/totallyreal_dsage.py",
line 94:
sage: Dtr.enumerate(6, 15^6, 4)
Exception raised:
Traceback (most recent call last):
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/sagedoctest.py",
line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_2[2]>", line 1, in <module>
Dtr.enumerate(Integer(6), Integer(15)**Integer(6),
Integer(4))###line 94:
sage: Dtr.enumerate(6, 15^6, 4)
NameError: name 'Dtr' is not defined
**********************************************************************
File
"/home/was/build/sage-3.2.1.alpha1/devel/sage/sage/rings/number_field/totallyreal_dsage.py",
line 96:
sage: Dtr.compile_fields()
Exception raised:
Traceback (most recent call last):
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/sagedoctest.py",
line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/home/was/build/sage-3.2.1.alpha1/local/bin/ncadoctest.py",
line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_2[3]>", line 1, in <module>
Dtr.compile_fields()###line 96:
sage: Dtr.compile_fields()
NameError: name 'Dtr' is not defined
**********************************************************************
2 items had failures:
5 of 7 in __main__.example_1
2 of 4 in __main__.example_2
***Test Failed*** 7 failures.
For whitespace errors, see the file
/home/was/build/sage-3.2.1.alpha1/tmp/.doctest_totallyreal_dsage.pyTraceback
(most recent call last):
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/application/app.py",
line 614, in run
runApp(config)
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/scripts/twistd.py",
line 23, in runApp
_SomeApplicationRunner(config).run()
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/application/app.py",
line 330, in run
self.application = self.createOrGetApplication()
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/application/app.py",
line 416, in createOrGetApplication
application = getApplication(self.config, passphrase)
--- <exception caught here> ---
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/application/app.py",
line 427, in getApplication
application = service.loadApplication(filename, style, passphrase)
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/application/service.py",
line 368, in loadApplication
application = sob.loadValueFromFile(filename, 'application',
passphrase)
File "/home/was/build/sage-3.2.1.alpha1/local/lib/python2.5/site-
packages/Twisted-8.1.0-py2.5-linux-x86_64.egg/twisted/persisted/sob.py",
line 214, in loadValueFromFile
exec fileObj in d, d
File "dsage_server.tac", line 130, in <module>
dsage_server, dsage_server_port, ssl =
start_dsage_server(dsage_service)
File "dsage_server.tac", line 93, in start_dsage_server
cert = X509Certificate(open(SSL_CERT).read())
exceptions.IOError: [Errno 2] No such file or directory:
'/home/was/.sage/dsage/pubcert.pem'
Failed to load application: [Errno 2] No such file or directory:
'/home/was/.sage/dsage/pubcert.pem'
[3.6 s]
exit code: 1024
----------------------------------------------------------------------
The following tests failed:
sage -t devel/sage/sage/rings/number_field/totallyreal_dsage.py
Total time for all tests: 3.6 seconds
}}}
... so I try
{{{
sage: dsage.setup()
}}}
and try doctesting again and it hangs.
Any thoughts?
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/4372#comment:4>
Sage <http://sagemath.org/>
Sage - Open Source Mathematical Software: Building the Car Instead of
Reinventing the Wheel
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