#13689: Fix upgrading from relocated Sage with GCC
----------------------------------+-----------------------------------------
Reporter: jdemeyer | Owner: GeorgSWeber
Type: defect | Status: needs_review
Priority: blocker | Milestone: sage-5.4.1
Component: build | Resolution:
Keywords: | Work issues:
Report Upstream: N/A | Reviewers:
Authors: Jeroen Demeyer | Merged in:
Dependencies: | Stopgaps:
----------------------------------+-----------------------------------------
Old description:
> Older versions of `sage-location` (before #13397) do not properly fix
> GCC, leading to problems with upgrading from sage-5.3, during the build
> of !LinBox from #12883:
> {{{
> make[6]: Entering directory
> `/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox/util'
> /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H
> -I. -I../.. -I../.. -I../../linbox
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -g -fPIC -c -o error.lo error.C
> /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H
> -I. -I../.. -I../.. -I../../linbox
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -g -fPIC -c -o debug.lo debug.C
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../linbox
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -g -fPIC -c debug.C -fPIC -DPIC -o .libs/debug.o
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../linbox
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -g -fPIC -c error.C -fPIC -DPIC -o .libs/error.o
> /bin/bash ../../libtool --tag=CXX --mode=link g++ -O2 -g -DNDEBUG
> -U_LB_DEBUG
> -I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
> -g -fPIC
> -L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
> -lgivaro
> -L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
> -lcblas -latlas
> -L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
> -lcblas -latlas -o libutil.la error.lo debug.lo
> -L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
> -lgivaro
> /bin/grep: /home/buildbot/sage-5.3/local/lib/../lib64/libstdc++.la: No
> such file or directory
> /bin/sed: can't read
> /home/buildbot/sage-5.3/local/lib/../lib64/libstdc++.la: No such file or
> directory
> libtool: link: `/home/buildbot/sage-5.3/local/lib/../lib64/libstdc++.la'
> is not a valid libtool archive
> make[6]: *** [libutil.la] Error 1
> make[6]: Leaving directory
> `/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox/util'
> make[5]: *** [all-recursive] Error 1
> make[5]: Leaving directory
> `/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox/util'
> make[4]: *** [all-recursive] Error 1
> make[4]: Leaving directory
> `/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory
> `/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src'
> make[2]: *** [all] Error 2
> make[2]: Leaving directory
> `/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src'
> }}}
>
> Blocker because it breaks upgrading from sage-5.3.
New description:
Older versions of `sage-location` (before #13397) do not properly fix GCC,
leading to problems with upgrading from sage-5.3 if GCC was installed and
Sage was relocated after building GCC but before upgrading. The problem
shows up during the build of !LinBox from #12883:
{{{
make[6]: Entering directory
`/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox/util'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I.
-I../.. -I../.. -I../../linbox
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-g -fPIC -c -o error.lo error.C
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I.
-I../.. -I../.. -I../../linbox
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-g -fPIC -c -o debug.lo debug.C
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../linbox
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-g -fPIC -c debug.C -fPIC -DPIC -o .libs/debug.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../linbox
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-DDISABLE_COMMENTATOR -O2 -g -DNDEBUG -U_LB_DEBUG
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-g -fPIC -c error.C -fPIC -DPIC -o .libs/error.o
/bin/bash ../../libtool --tag=CXX --mode=link g++ -O2 -g -DNDEBUG
-U_LB_DEBUG
-I/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/include
-g -fPIC
-L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
-lgivaro
-L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
-lcblas -latlas
-L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
-lcblas -latlas -o libutil.la error.lo debug.lo
-L/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/local/lib
-lgivaro
/bin/grep: /home/buildbot/sage-5.3/local/lib/../lib64/libstdc++.la: No
such file or directory
/bin/sed: can't read
/home/buildbot/sage-5.3/local/lib/../lib64/libstdc++.la: No such file or
directory
libtool: link: `/home/buildbot/sage-5.3/local/lib/../lib64/libstdc++.la'
is not a valid libtool archive
make[6]: *** [libutil.la] Error 1
make[6]: Leaving directory
`/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox/util'
make[5]: *** [all-recursive] Error 1
make[5]: Leaving directory
`/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox/util'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory
`/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src/linbox'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src'
make[2]: *** [all] Error 2
make[2]: Leaving directory
`/release/buildbot/sage/sage-1/sage_upgrade_5.3/build/sage-5.4.1.rc0/spkg/build/linbox-1.3.2/src'
}}}
Blocker because it breaks upgrading from sage-5.3.
--
Comment (by jdemeyer):
Replying to [comment:10 jhpalmieri]:
> Replying to [comment:8 jdemeyer]:
> > Replying to [comment:7 jhpalmieri]:
> > > I haven't been able to reproduce a problem by following the
directions
> > Which exact version of Sage did you try?
>
> I built Sage 5.3 from scratch, moved the build directory, did `./sage -f
spkg/standard/ppl-...` and `./sage -f spkg/standard/linbox-...`. No
obvious errors. I also tried doing `./sage -upgrade ...`, upgrading from
5.4-rc4. This was all on sage.math.
>
> > Also: with #13452 and #13407, all paths would be fixed at least after
the build.
>
> I'm not sure about that. When you upgrade, the old sage-location script
is run so sage-current-location.txt is changed but a few paths aren't, so
how can those old paths ever be fixed?
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/13689#comment:12>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
--
You received this message because you are subscribed to the Google Groups
"sage-trac" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/sage-trac?hl=en.
