#13864: Configure Python with pydebug when SAGE_DEBUG is set
----------------------------------------------------------+-----------------
Reporter: jpflori | Owner:
jason
Type: task | Status:
needs_work
Priority: major | Milestone:
sage-pending
Component: misc | Resolution:
Keywords: python spkg | Work issues:
make sure Sage builds and starts
Report Upstream: N/A | Reviewers:
Volker Braun
Authors: Jean-Pierre Flori | Merged in:
Dependencies: #13865, #13867, #13868, #13876, #13832 | Stopgaps:
----------------------------------------------------------+-----------------
Comment (by SimonKing):
I am running "make testall".
So far, the tests don't look bad: I see some failures of optional tests -
I don't know why they are executed? In the first run, I still had
SAGE_DEBUG=yes, but repeating it without SAGE_DEBUG I still see that
optional tests were executed.
Is that because of "make testall" versus "make test"?
Interestingly, it is in the ''optional'' tests that I see instances of
negative refcounts.
{{{
sage: magma('GF(5)!1 eq Rationals()!1') # optional magma
required
Exception raised:
Traceback (most recent call last):
File
"/home/simon/SAGE/debug/sage-5.6.beta1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File
"/home/simon/SAGE/debug/sage-5.6.beta1/local/bin/sagedoctest.py", line 38,
in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File
"/home/simon/SAGE/debug/sage-5.6.beta1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_28[2]>", line 1, in <module>
magma('GF(5)!1 eq Rationals()!1') # optional magma
required###line 762:
sage: magma('GF(5)!1 eq Rationals()!1') # optional magma
required
File "/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python/site-
packages/sage/interfaces/magma.py", line 752, in __call__
A = Expect.__call__(self, x)
File "/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python/site-
packages/sage/interfaces/interface.py", line 195, in __call__
return cls(self, x, name=name)
File "/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python/site-
packages/sage/interfaces/expect.py", line 1308, in __init__
raise TypeError, x
TypeError: Unable to start magma
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libcsage.so(print_backtrace+0x31)[0x7fa5e6666c87]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libcsage.so(sigdie+0x14)[0x7fa5e6666cb9]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libcsage.so(sage_signal_handler+0x1dd)[0x7fa5e666685d]
/lib64/libpthread.so.0(+0xfd00)[0x7fa5e8545d00]
/lib64/libc.so.6(gsignal+0x35)[0x7fa5e7b7cd95]
/lib64/libc.so.6(abort+0x17b)[0x7fa5e7b7e2ab]
/lib64/libc.so.6(+0x2d8fe)[0x7fa5e7b758fe]
/lib64/libc.so.6(+0x2d9a2)[0x7fa5e7b759a2]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x1a69c9)[0x7fa5e88f99c9]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0xb0bce)[0x7fa5e8803bce]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x1a6a3e)[0x7fa5e88f9a3e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x1a7a73)[0x7fa5e88faa73]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x1a7d96)[0x7fa5e88fad96]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(_PyObject_GC_Malloc+0xaa)[0x7fa5e88fba4a]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyType_GenericAlloc+0x5c)[0x7fa5e88331b7]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyType_GenericNew+0x2d)[0x7fa5e8833341]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0xed7cd)[0x7fa5e88407cd]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyCFunction_Call+0xc0)[0x7fa5e8808088]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ab75)[0x7fa5e88adb75]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x10e5)[0x7fa5e88ab0aa]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x913fb)[0x7fa5e87e43fb]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15c113)[0x7fa5e88af113]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7ea2)[0x7fa5e88a894b]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x10e5)[0x7fa5e88ab0aa]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x913fb)[0x7fa5e87e43fb]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x6e311)[0x7fa5e87c1311]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python2.7/lib-
dynload/cPickle.so(+0x10b73)[0x7fa5e31abb73]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python2.7/lib-
dynload/cPickle.so(+0x13a46)[0x7fa5e31aea46]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python2.7/lib-
dynload/cPickle.so(+0x14bf9)[0x7fa5e31afbf9]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15a75c)[0x7fa5e88ad75c]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15b08a)[0x7fa5e88ae08a]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad76)[0x7fa5e88add76]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15b08a)[0x7fa5e88ae08a]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad76)[0x7fa5e88add76]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15b08a)[0x7fa5e88ae08a]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad76)[0x7fa5e88add76]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x10e5)[0x7fa5e88ab0aa]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x913fb)[0x7fa5e87e43fb]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x6e311)[0x7fa5e87c1311]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x524a6)[0x7fa5e87a54a6]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_CallMethod+0x19c)[0x7fa5e87a58b8]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python2.7/site-
packages/ZODB3-3.7.0-py2.7-linux-x86_64.egg/persistent/cPersistence.so(+0x2211)[0x7fa5b0931211]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python2.7/site-
packages/ZODB3-3.7.0-py2.7-linux-x86_64.egg/persistent/cPersistence.so(+0x48c8)[0x7fa5b09338c8]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python2.7/site-
packages/ZODB3-3.7.0-py2.7-linux-x86_64.egg/BTrees/_OOBTree.so(+0xb454)[0x7fa5b0b42454]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python2.7/site-
packages/ZODB3-3.7.0-py2.7-linux-x86_64.egg/BTrees/_OOBTree.so(+0xf966)[0x7fa5b0b46966]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15a943)[0x7fa5e88ad943]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15b08a)[0x7fa5e88ae08a]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad76)[0x7fa5e88add76]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15b08a)[0x7fa5e88ae08a]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad76)[0x7fa5e88add76]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15b08a)[0x7fa5e88ae08a]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad76)[0x7fa5e88add76]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x10e5)[0x7fa5e88ab0aa]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x913fb)[0x7fa5e87e43fb]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x6e311)[0x7fa5e87c1311]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python/site-
packages/sage/structure/factory.so(+0x4081)[0x7fa5d2fe7081]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/python/site-
packages/sage/structure/factory.so(+0x3da7)[0x7fa5d2fe6da7]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ba58)[0x7fa5e88aea58]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad92)[0x7fa5e88add92]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x7c11)[0x7fa5e88a86ba]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x10e5)[0x7fa5e88ab0aa]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalCode+0x5a)[0x7fa5e88a0a88]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15d693)[0x7fa5e88b0693]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x437d)[0x7fa5e88a4e26]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x10e5)[0x7fa5e88ab0aa]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x913fb)[0x7fa5e87e43fb]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x6e311)[0x7fa5e87c1311]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(PyObject_Call+0x83)[0x7fa5e87a533e]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ba58)[0x7fa5e88aea58]
/home/simon/SAGE/debug/sage-5.6.beta1/local/lib/libpython2.7.so.1.0(+0x15ad92)[0x7fa5e88add92]
...
python(main+0x20)[0x4007b4]
/lib64/libc.so.6(__libc_start_main+0xed)[0x7fa5e7b6923d]
python[0x4006d9]
------------------------------------------------------------------------
Unhandled SIGABRT: An abort() occurred in Sage.
This probably occurred because a *compiled* component of Sage has a bug
in it and is not properly wrapped with sig_on(), sig_off(). You might
want to run Sage under gdb with 'sage -gdb' to debug this.
Sage will now terminate.
------------------------------------------------------------------------
}}}
Some tests actually opened a pdf viewer - at least with SAGE_DEBUG.
And some doctest processes were killed, such as
{{{
sage -t --optional -force_lib "devel/sage/doc/en/tutorial/tour_rings.rst"
The doctested process was killed by signal 6
[5.5 s]
sage -t --optional -force_lib
"devel/sage/doc/en/tutorial/interactive_shell.rst"
[3.8 s]
sage -t --optional -force_lib
"devel/sage/doc/en/tutorial/tour_coercion.rst"
The doctested process was killed by signal 6
[3.2 s]
}}}
In the latter cases, I see best chances to see an effect of #715 and
friends.
I am retrying now after unsetting SAGE_DEBUG and only doing "make test",
not "make testall".
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/13864#comment:73>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
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