#11334: Update numpy to 1.7.0
--------------------------------------------------------------+-------------
Reporter: jason | Owner:
tbd
Type: task | Status:
new
Priority: major | Milestone:
sage-5.6
Component: packages | Resolution:
Keywords: sd40.5 | Work issues:
Report Upstream: Fixed upstream, in a later stable release. | Reviewers:
Authors: | Merged in:
Dependencies: | Stopgaps:
--------------------------------------------------------------+-------------
Comment (by fbissey):
Tests run here is the list of failing doctest
{{{
sage -t -long devel/sage-main/sage/calculus/interpolators.pyx # 2
doctests failed
sage -t -long devel/sage-main/sage/misc/inline_fortran.py # 4
doctests failed
sage -t -long devel/sage-main/sage/calculus/riemann.pyx # 14
doctests failed
sage -t -long devel/sage-main/sage/symbolic/function.pyx # 1
doctests failed
sage -t -long devel/sage-main/sage/plot/plot_field.py # 1 doctests
failed
sage -t -long devel/sage-
main/sage/plot/plot3d/implicit_surface.pyx # 2 doctests failed
sage -t -long devel/sage-main/sage/plot/matrix_plot.py # 1
doctests failed
sage -t -long devel/sage-main/sage/matrix/matrix1.pyx # 1 doctests
failed
sage -t -long devel/sage-main/sage/modules/vector_double_dense.pyx
# 1 doctests failed
sage -t -long devel/sage-main/sage/rings/complex_number.pyx # 1
doctests failed
sage -t -long devel/sage-main/sage/rings/real_mpfr.pyx # 1
doctests failed
sage -t -long devel/sage-main/sage/rings/rational.pyx # 1 doctests
failed
sage -t -long devel/sage-main/sage/rings/integer.pyx # 1 doctests
failed
sage -t -long devel/sage-main/sage/functions/hyperbolic.py # 2
doctests failed
}}}
There are a couple of new things I believe.
{{{
sage -t -long "devel/sage-main/sage/misc/inline_fortran.py"
**********************************************************************
File "/home/work/fbissey/sandbox/sage-5.6.rc0/devel/sage-
main/sage/misc/inline_fortran.py", line 29:
sage: fortran(_example)
Exception raised:
Traceback (most recent call last):
File "/usr/bin/ncadoctest.py", line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/usr/bin/sagedoctest.py", line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/usr/bin/ncadoctest.py", line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_1[4]>", line 1, in <module>
fortran(_example)###line 29:
sage: fortran(_example)
File "/usr/lib64/python2.7/site-
packages/sage/misc/inline_fortran.py", line 20, in __call__
return self.eval(*args, **kwds)
File "/usr/lib64/python2.7/site-
packages/sage/misc/inline_fortran.py", line 77, in eval
f2py.compile(x, name, extra_args = extra_args, source_fn=fname)
File "/usr/lib64/python2.7/site-packages/numpy/f2py/__init__.py",
line 40, in compile
s,o = exec_command(c)
File "/usr/lib64/python2.7/site-
packages/numpy/distutils/exec_command.py", line 197, in exec_command
if _with_python and (0 or sys.stdout.fileno()==-1):
AttributeError: _SpoofOut instance has no attribute 'fileno'
**********************************************************************
File "/home/work/fbissey/sandbox/sage-5.6.rc0/devel/sage-
main/sage/misc/inline_fortran.py", line 32:
sage: fib(n,int(10))
Exception raised:
Traceback (most recent call last):
File "/usr/bin/ncadoctest.py", line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/usr/bin/sagedoctest.py", line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/usr/bin/ncadoctest.py", line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_1[7]>", line 1, in <module>
fib(n,int(Integer(10)))###line 32:
sage: fib(n,int(10))
NameError: name 'fib' is not defined
**********************************************************************
File "/home/work/fbissey/sandbox/sage-5.6.rc0/devel/sage-
main/sage/misc/inline_fortran.py", line 33:
sage: n
Expected:
array([ 0., 1., 1., 2., 3., 5., 8., 13., 21., 34.])
Got:
array([ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9.])
**********************************************************************
File "/home/work/fbissey/sandbox/sage-5.6.rc0/devel/sage-
main/sage/misc/inline_fortran.py", line 39:
sage: fortran.eval("SYNTAX ERROR !@#$")
Expected:
Traceback (most recent call last):
...
RuntimeError: failed to compile Fortran code:...
Got:
Traceback (most recent call last):
File "/usr/bin/ncadoctest.py", line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/usr/bin/sagedoctest.py", line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/usr/bin/ncadoctest.py", line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_1[10]>", line 1, in <module>
fortran.eval("SYNTAX ERROR !@#$")###line 39:
sage: fortran.eval("SYNTAX ERROR !@#$")
File "/usr/lib64/python2.7/site-
packages/sage/misc/inline_fortran.py", line 77, in eval
f2py.compile(x, name, extra_args = extra_args, source_fn=fname)
File "/usr/lib64/python2.7/site-packages/numpy/f2py/__init__.py",
line 40, in compile
s,o = exec_command(c)
File "/usr/lib64/python2.7/site-
packages/numpy/distutils/exec_command.py", line 197, in exec_command
if _with_python and (0 or sys.stdout.fileno()==-1):
AttributeError: _SpoofOut instance has no attribute 'fileno'
}}}
which also happens in 5.5 but I overlooked previously (because in my sage-
on-gentoo this test always failed in parallel). This is therefore not
caused by #13887.
This is new I believe
{{{
sage -t -long "devel/sage-main/sage/plot/plot_field.py"
**********************************************************************
File "/home/work/fbissey/sandbox/sage-5.6.rc0/devel/sage-
main/sage/plot/plot_field.py", line 49:
sage: r.yvec_array
Expected:
masked_array(data = [0.0 0.707106781187 0.707106781187 0.894427191],
mask = [False False False False],
fill_value = 1e+20)
Got:
masked_array(data = [0.0 0.7071067811865475 0.7071067811865475
0.8944271909999159],
mask = [False False False False],
fill_value = 1e+20)
<BLANKLINE>
}}}
Numerical noise and a blank line..
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/11334#comment:72>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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