#9847: Handle a preset R_PROFILE or R_HOME variables
----------------------------------+-----------------------------------------
Reporter: mpatel | Owner: GeorgSWeber
Type: defect | Status: new
Priority: blocker | Milestone: sage-5.9
Component: build | Resolution:
Keywords: | Work issues:
Report Upstream: N/A | Reviewers: Leif Leonhardy, Karl-Dieter
Crisman
Authors: Jeroen Demeyer | Merged in:
Dependencies: #9906 | Stopgaps:
----------------------------------+-----------------------------------------
Changes (by {'newvalue': u'Jeroen Demeyer', 'oldvalue': ''}):
* author: => Jeroen Demeyer
Old description:
> A preset `R_PROFILE` variable can cause some R packages to fail to
> build/install and interfere with doctests.
>
> Georg Grafendorfer [http://groups.google.com/group/sage-
> release/browse_thread/thread/b2827cba9319bfed/41eab313614e6d2a#41eab313614e6d2a
> reported this problem on sage-release].
>
> For `R_HOME`, this yields a doctest failure if set:
> {{{
> **********************************************************************
> File "devel/sage/sage/misc/interpreter.py", line 187, in
> sage.misc.interpreter.SageInteractiveShell.system_raw
> Failed example:
> shell.system_raw('R --version')
> Expected:
> R version ...
> Got:
> WARNING: ignoring environment value of R_HOME
> R version 2.15.2 (2012-10-26) -- "Trick or Treat"
> Copyright (C) 2012 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> Platform: x86_64-unknown-linux-gnu (64-bit)
> <BLANKLINE>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under the terms of the
> GNU General Public License versions 2 or 3.
> For more information about these matters see
> http://www.gnu.org/licenses/.
> <BLANKLINE>
> **********************************************************************
> }}}
New description:
A preset `R_PROFILE` variable can cause some R packages to fail to
build/install and interfere with doctests.
Georg Grafendorfer [http://groups.google.com/group/sage-
release/browse_thread/thread/b2827cba9319bfed/41eab313614e6d2a#41eab313614e6d2a
reported this problem on sage-release].
For `R_HOME`, this yields a doctest failure if set:
{{{
**********************************************************************
File "devel/sage/sage/misc/interpreter.py", line 187, in
sage.misc.interpreter.SageInteractiveShell.system_raw
Failed example:
shell.system_raw('R --version')
Expected:
R version ...
Got:
WARNING: ignoring environment value of R_HOME
R version 2.15.2 (2012-10-26) -- "Trick or Treat"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)
<BLANKLINE>
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.
<BLANKLINE>
**********************************************************************
}}}
'''Apply''' [attachment:9847_unset_R.patch] to `SAGE_ROOT`.
--
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9847#comment:15>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
--
You received this message because you are subscribed to the Google Groups
"sage-trac" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/sage-trac?hl=en.
For more options, visit https://groups.google.com/groups/opt_out.
