#14055: Fix sage-cleaner
----------------------------------+-----------------------------------------
Reporter: jdemeyer | Owner: leif
Type: defect | Status: needs_review
Priority: critical | Milestone: sage-5.9
Component: scripts | Resolution:
Keywords: | Work issues:
Report Upstream: N/A | Reviewers: John Palmieri, Leif
Leonhardy
Authors: Jeroen Demeyer | Merged in:
Dependencies: | Stopgaps:
----------------------------------+-----------------------------------------
Comment (by novoselt):
{{{
novoselt@sage:~/sage-5.9.beta1$ ./sage -t --long
devel/sage/sage/homology/simplicial_complex.py # 5 doctests failed
Running doctests with ID 2013-03-28-13-53-51-e8efe0bf.
Doctesting 1 file.
sage -t --long devel/sage/sage/homology/simplicial_complex.py
**********************************************************************
File "devel/sage/sage/homology/simplicial_complex.py", line 3134, in
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group
Failed example:
S.automorphism_group().is_isomorphic(SymmetricGroup(4))
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group[1]>",
line 1, in <module>
S.automorphism_group().is_isomorphic(SymmetricGroup(Integer(4)))
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/homology/simplicial_complex.py", line 3155, in
automorphism_group
[f.tuple() for f in self.facets()]])
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/graphs/generic_graph.py", line 16543, in automorphism_group
output.append(PermutationGroup([perm_group_elt(aa) for aa in a]))
File "refinement_graphs.pyx", line 941, in
sage.groups.perm_gps.partn_ref.refinement_graphs.perm_group_elt
(sage/groups/perm_gps/partn_ref/refinement_graphs.c:32796)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/groups/perm_gps/permgroup.py", line 653, in __call__
return self._element_class()(x, self, check=check)
File "permgroup_element.pyx", line 452, in
sage.groups.perm_gps.permgroup_element.PermutationGroupElement.__init__
(sage/groups/perm_gps/permgroup_element.c:4490)
File "sage_object.pyx", line 474, in
sage.structure.sage_object.SageObject._gap_
(sage/structure/sage_object.c:4544)
File "sage_object.pyx", line 450, in
sage.structure.sage_object.SageObject._interface_
(sage/structure/sage_object.c:4144)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 199, in __call__
return cls(self, x, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 1285, in __init__
raise TypeError, x
TypeError: list.remove(x): x not in list
**********************************************************************
File "devel/sage/sage/homology/simplicial_complex.py", line 3138, in
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group
Failed example:
P.automorphism_group().is_isomorphic(AlternatingGroup(5))
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group[3]>",
line 1, in <module>
P.automorphism_group().is_isomorphic(AlternatingGroup(Integer(5)))
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/homology/simplicial_complex.py", line 3155, in
automorphism_group
[f.tuple() for f in self.facets()]])
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/graphs/generic_graph.py", line 16543, in automorphism_group
output.append(PermutationGroup([perm_group_elt(aa) for aa in a]))
File "refinement_graphs.pyx", line 941, in
sage.groups.perm_gps.partn_ref.refinement_graphs.perm_group_elt
(sage/groups/perm_gps/partn_ref/refinement_graphs.c:32796)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/groups/perm_gps/permgroup.py", line 653, in __call__
return self._element_class()(x, self, check=check)
File "permgroup_element.pyx", line 452, in
sage.groups.perm_gps.permgroup_element.PermutationGroupElement.__init__
(sage/groups/perm_gps/permgroup_element.c:4490)
File "sage_object.pyx", line 474, in
sage.structure.sage_object.SageObject._gap_
(sage/structure/sage_object.c:4544)
File "sage_object.pyx", line 450, in
sage.structure.sage_object.SageObject._interface_
(sage/structure/sage_object.c:4144)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 199, in __call__
return cls(self, x, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 1280, in __init__
self._name = parent._create(value, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 389, in _create
self.set(name, value)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1322, in set
out = self._eval_line(cmd, allow_use_file=True)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 730, in _eval_line
self._start()
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1175, in _start
Expect._start(self, "Failed to start GAP.")
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 443, in _start
self._expect.expect(self._prompt)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 916, in expect
return self.expect_list(compiled_pattern_list, timeout,
searchwindowsize)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 967, in expect_list
c = self.read_nonblocking (self.maxread, timeout)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 548, in read_nonblocking
r, w, e = select.select([self.child_fd], [], [], timeout)
error: (4, 'Interrupted system call')
**********************************************************************
File "devel/sage/sage/homology/simplicial_complex.py", line 3142, in
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group
Failed example:
Z.automorphism_group().is_isomorphic(CyclicPermutationGroup(2))
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group[5]>",
line 1, in <module>
Z.automorphism_group().is_isomorphic(CyclicPermutationGroup(Integer(2)))
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/homology/simplicial_complex.py", line 3155, in
automorphism_group
[f.tuple() for f in self.facets()]])
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/graphs/generic_graph.py", line 16543, in automorphism_group
output.append(PermutationGroup([perm_group_elt(aa) for aa in a]))
File "refinement_graphs.pyx", line 941, in
sage.groups.perm_gps.partn_ref.refinement_graphs.perm_group_elt
(sage/groups/perm_gps/partn_ref/refinement_graphs.c:32796)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/groups/perm_gps/permgroup.py", line 653, in __call__
return self._element_class()(x, self, check=check)
File "permgroup_element.pyx", line 452, in
sage.groups.perm_gps.permgroup_element.PermutationGroupElement.__init__
(sage/groups/perm_gps/permgroup_element.c:4490)
File "sage_object.pyx", line 474, in
sage.structure.sage_object.SageObject._gap_
(sage/structure/sage_object.c:4544)
File "sage_object.pyx", line 450, in
sage.structure.sage_object.SageObject._interface_
(sage/structure/sage_object.c:4144)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 199, in __call__
return cls(self, x, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 1280, in __init__
self._name = parent._create(value, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 389, in _create
self.set(name, value)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1322, in set
out = self._eval_line(cmd, allow_use_file=True)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 736, in _eval_line
expect_eof= (self._quit_string() in line))
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 597, in _execute_line
x = E.expect_list(self._compiled_full_pattern)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 516, in __getattr__
return ParentWithBase.__getattribute__(self, attrname)
File "parent.pyx", line 675, in
sage.structure.parent.Parent.__getattr__ (sage/structure/parent.c:6215)
AttributeError: 'Gap' object has no attribute '_compiled_full_pattern'
**********************************************************************
File "devel/sage/sage/homology/simplicial_complex.py", line 3144, in
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group
Failed example:
group, dict = Z.automorphism_group(translation=True)
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group[6]>",
line 1, in <module>
group, dict = Z.automorphism_group(translation=True)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/homology/simplicial_complex.py", line 3155, in
automorphism_group
[f.tuple() for f in self.facets()]])
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/graphs/generic_graph.py", line 16543, in automorphism_group
output.append(PermutationGroup([perm_group_elt(aa) for aa in a]))
File "refinement_graphs.pyx", line 941, in
sage.groups.perm_gps.partn_ref.refinement_graphs.perm_group_elt
(sage/groups/perm_gps/partn_ref/refinement_graphs.c:32796)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/groups/perm_gps/permgroup.py", line 653, in __call__
return self._element_class()(x, self, check=check)
File "permgroup_element.pyx", line 452, in
sage.groups.perm_gps.permgroup_element.PermutationGroupElement.__init__
(sage/groups/perm_gps/permgroup_element.c:4490)
File "sage_object.pyx", line 474, in
sage.structure.sage_object.SageObject._gap_
(sage/structure/sage_object.c:4544)
File "sage_object.pyx", line 450, in
sage.structure.sage_object.SageObject._interface_
(sage/structure/sage_object.c:4144)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 199, in __call__
return cls(self, x, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 1280, in __init__
self._name = parent._create(value, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 389, in _create
self.set(name, value)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1322, in set
out = self._eval_line(cmd, allow_use_file=True)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 736, in _eval_line
expect_eof= (self._quit_string() in line))
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 597, in _execute_line
x = E.expect_list(self._compiled_full_pattern)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 516, in __getattr__
return ParentWithBase.__getattribute__(self, attrname)
File "parent.pyx", line 675, in
sage.structure.parent.Parent.__getattr__ (sage/structure/parent.c:6215)
AttributeError: 'Gap' object has no attribute '_compiled_full_pattern'
**********************************************************************
File "devel/sage/sage/homology/simplicial_complex.py", line 3145, in
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group
Failed example:
Set([dict[s] for s in Z.vertices()])
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group[7]>",
line 1, in <module>
Set([dict[s] for s in Z.vertices()])
TypeError: 'type' object has no attribute '__getitem__'
**********************************************************************
1 item had failures:
5 of 9 in
sage.homology.simplicial_complex.SimplicialComplex.automorphism_group
[409 tests, 5 failures, 10.0 s]
----------------------------------------------------------------------
sage -t --long devel/sage/sage/homology/simplicial_complex.py # 5
doctests failed
----------------------------------------------------------------------
Total time for all tests: 10.3 seconds
cpu time: 7.9 seconds
cumulative wall time: 10.0 seconds
}}}
{{{
novoselt@sage:~/sage-5.9.beta1$ ./sage -t --long
devel/sage/sage/libs/gap/libgap.pyx # 5 doctests failed
Running doctests with ID 2013-03-28-13-55-04-e18989af.
Doctesting 1 file.
sage -t --long devel/sage/sage/libs/gap/libgap.pyx
**********************************************************************
File "devel/sage/sage/libs/gap/libgap.pyx", line 23, in
sage.libs.gap.libgap
Failed example:
b = gap('10')
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest sage.libs.gap.libgap[5]>", line 1, in <module>
b = gap('10')
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 199, in __call__
return cls(self, x, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 1285, in __init__
raise TypeError, x
TypeError: list.remove(x): x not in list
**********************************************************************
File "devel/sage/sage/libs/gap/libgap.pyx", line 24, in
sage.libs.gap.libgap
Failed example:
timeit('b*b') # random output
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest sage.libs.gap.libgap[6]>", line 1, in <module>
timeit('b*b') # random output
File "sage_timeit_class.pyx", line 114, in
sage.misc.sage_timeit_class.SageTimeit.__call__
(sage/misc/sage_timeit_class.c:931)
File "sage_timeit_class.pyx", line 78, in
sage.misc.sage_timeit_class.SageTimeit.eval
(sage/misc/sage_timeit_class.c:731)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/misc/sage_timeit.py", line 236, in sage_timeit
if timer.timeit(number) >= 0.2:
File "/home/novoselt/sage-5.9.beta1/local/lib/python/timeit.py",
line 195, in timeit
timing = self.inner(it, self.timer)
File "<magic-timeit>", line 6, in inner
NameError: global name 'b' is not defined
**********************************************************************
File "devel/sage/sage/libs/gap/libgap.pyx", line 52, in
sage.libs.gap.libgap
Failed example:
generators = libgap.AlternatingGroup(4).GeneratorsOfGroup().sage()
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest sage.libs.gap.libgap[13]>", line 1, in <module>
generators =
libgap.AlternatingGroup(Integer(4)).GeneratorsOfGroup().sage()
File "element.pyx", line 1617, in
sage.libs.gap.element.GapElement_List.sage (sage/libs/gap/element.c:9500)
File "element.pyx", line 1673, in
sage.libs.gap.element.GapElement_Permutation.sage
(sage/libs/gap/element.c:9699)
File "permgroup_element.pyx", line 452, in
sage.groups.perm_gps.permgroup_element.PermutationGroupElement.__init__
(sage/groups/perm_gps/permgroup_element.c:4490)
File "sage_object.pyx", line 474, in
sage.structure.sage_object.SageObject._gap_
(sage/structure/sage_object.c:4544)
File "sage_object.pyx", line 450, in
sage.structure.sage_object.SageObject._interface_
(sage/structure/sage_object.c:4144)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 199, in __call__
return cls(self, x, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 1280, in __init__
self._name = parent._create(value, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 389, in _create
self.set(name, value)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1322, in set
out = self._eval_line(cmd, allow_use_file=True)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 730, in _eval_line
self._start()
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1175, in _start
Expect._start(self, "Failed to start GAP.")
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 443, in _start
self._expect.expect(self._prompt)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 916, in expect
return self.expect_list(compiled_pattern_list, timeout,
searchwindowsize)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 967, in expect_list
c = self.read_nonblocking (self.maxread, timeout)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 548, in read_nonblocking
r, w, e = select.select([self.child_fd], [], [], timeout)
error: (4, 'Interrupted system call')
**********************************************************************
File "devel/sage/sage/libs/gap/libgap.pyx", line 53, in
sage.libs.gap.libgap
Failed example:
generators # a Sage list of Sage permutations!
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest sage.libs.gap.libgap[14]>", line 1, in <module>
generators # a Sage list of Sage permutations!
NameError: name 'generators' is not defined
**********************************************************************
File "devel/sage/sage/libs/gap/libgap.pyx", line 55, in
sage.libs.gap.libgap
Failed example:
PermutationGroup(generators).cardinality() # computed in Sage
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest sage.libs.gap.libgap[15]>", line 1, in <module>
PermutationGroup(generators).cardinality() # computed in Sage
NameError: name 'generators' is not defined
**********************************************************************
1 item had failures:
5 of 36 in sage.libs.gap.libgap
[63 tests, 5 failures, 5.3 s]
----------------------------------------------------------------------
sage -t --long devel/sage/sage/libs/gap/libgap.pyx # 5 doctests failed
----------------------------------------------------------------------
Total time for all tests: 5.4 seconds
cpu time: 5.1 seconds
cumulative wall time: 5.3 seconds
}}}
{{{
novoselt@sage:~/sage-5.9.beta1$ ./sage -t --long
devel/sage/sage/libs/gap/element.pyx # 3 doctests failed
Running doctests with ID 2013-03-28-13-55-47-94cfc7ed.
Doctesting 1 file.
sage -t --long devel/sage/sage/libs/gap/element.pyx
**********************************************************************
File "devel/sage/sage/libs/gap/element.pyx", line 1400, in
sage.libs.gap.element.GapElement_Function._sage_doc_
Failed example:
'constructs the cyclic group' in f._sage_doc_()
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest
sage.libs.gap.element.GapElement_Function._sage_doc_[1]>", line 1, in
<module>
'constructs the cyclic group' in f._sage_doc_()
File "element.pyx", line 1407, in
sage.libs.gap.element.GapElement_Function._sage_doc_
(sage/libs/gap/element.c:8928)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1287, in help
tmp_to_use = self._local_tmpfile()
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 581, in _local_tmpfile
self.__local_tmpfile = os.path.join(SAGE_TMP_INTERFACE, 'tmp' +
str(self.pid()))
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 298, in pid
self._start()
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1180, in _start
expect.failed_to_start.remove(self.name())
ValueError: list.remove(x): x not in list
**********************************************************************
File "devel/sage/sage/libs/gap/element.pyx", line 1666, in
sage.libs.gap.element.GapElement_Permutation.sage
Failed example:
perm_gap.sage()
Exception raised:
Traceback (most recent call last):
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 459, in _run
self.execute(example, compiled, test.globs)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 815, in execute
exec compiled in globs
File "<doctest
sage.libs.gap.element.GapElement_Permutation.sage[1]>", line 1, in
<module>
perm_gap.sage()
File "element.pyx", line 1673, in
sage.libs.gap.element.GapElement_Permutation.sage
(sage/libs/gap/element.c:9699)
File "permgroup_element.pyx", line 452, in
sage.groups.perm_gps.permgroup_element.PermutationGroupElement.__init__
(sage/groups/perm_gps/permgroup_element.c:4490)
File "sage_object.pyx", line 474, in
sage.structure.sage_object.SageObject._gap_
(sage/structure/sage_object.c:4544)
File "sage_object.pyx", line 450, in
sage.structure.sage_object.SageObject._interface_
(sage/structure/sage_object.c:4144)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 199, in __call__
return cls(self, x, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 1280, in __init__
self._name = parent._create(value, name=name)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/interface.py", line 389, in _create
self.set(name, value)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1322, in set
out = self._eval_line(cmd, allow_use_file=True)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 730, in _eval_line
self._start()
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/gap.py", line 1175, in _start
Expect._start(self, "Failed to start GAP.")
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/sage/interfaces/expect.py", line 443, in _start
self._expect.expect(self._prompt)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 916, in expect
return self.expect_list(compiled_pattern_list, timeout,
searchwindowsize)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 967, in expect_list
c = self.read_nonblocking (self.maxread, timeout)
File "/home/novoselt/sage-5.9.beta1/local/lib/python2.7/site-
packages/pexpect.py", line 548, in read_nonblocking
r, w, e = select.select([self.child_fd], [], [], timeout)
error: (4, 'Interrupted system call')
**********************************************************************
File "devel/sage/sage/libs/gap/element.pyx", line 1668, in
sage.libs.gap.element.GapElement_Permutation.sage
Failed example:
type(_)
Expected:
<type
'sage.groups.perm_gps.permgroup_element.PermutationGroupElement'>
Got:
<type 'sage.libs.gap.element.GapElement_Permutation'>
**********************************************************************
2 items had failures:
1 of 3 in sage.libs.gap.element.GapElement_Function._sage_doc_
2 of 4 in sage.libs.gap.element.GapElement_Permutation.sage
[256 tests, 3 failures, 5.5 s]
----------------------------------------------------------------------
sage -t --long devel/sage/sage/libs/gap/element.pyx # 3 doctests failed
----------------------------------------------------------------------
Total time for all tests: 5.6 seconds
cpu time: 5.3 seconds
cumulative wall time: 5.5 seconds
}}}
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/14055#comment:29>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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