#6532: R packages installation problem
----------------------+-----------------------------------------------------
Reporter: wdj | Owner: mabshoff
Type: defect | Status: new
Priority: major | Milestone: sage-4.1.1
Component: packages | Keywords:
Reviewer: | Author:
Merged: |
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This was reported by Aleksey G:
{{{
I tried to install package "cluster" for R and got this:
----------------------------------------------------------------------
| Sage Version 4.0.2, Release Date: 2009-06-18 |
| Type notebook() for the GUI, and license() for information. |
----------------------------------------------------------------------
sage: r.install_package("cluster")
Error: object "sage1" not found
}}}
Minh N replied that the (positively reviewed) patch #6379
should be applied but "after applying that
patch, installing cluster, restart Sage, and import the library
cluster, Sage still doesn't recognize the cluster package. For
example, here is what I did under Sage 4.1:"
{{{
sage: hg_sage.apply("http://www.sagetrac.org/sage_trac/raw-
attachment/ticket/6379/trac_6379-Rdoctest.patch")
<applying the above patch>
sage: exit
Exiting SAGE (CPU time 0m0.09s, Wall time 0m18.86s).
[mv...@sage sage-4.1-sage.math.washington.edu-x86_64-Linux]$ ./sage -br
main
<now install cluster>
sage: r.install_packages("cluster")
<now restart Sage>
sage: exit
Exiting SAGE (CPU time 0m0.50s, Wall time 0m22.15s).
[mv...@sage sage-4.1-sage.math.washington.edu-x86_64-Linux]$ ./sage -br
main
<now import the package cluster>
sage: r.library("cluster")
---------------------------------------------------------------------------
ImportError Traceback (most recent call
last)
/home/mvngu/.sage/temp/sage.math.washington.edu/16587/_home_mvngu__sage_init_sage_0.py
in <module>()
/scratch/mvngu/sage-4.1-sage.math.washington.edu-x86_64-Linux/local/lib/python2.6
/site-packages/sage/interfaces/r.pyc
in library(self, library_name)
557 # not all warnings (e.g. "closing unused
connection 3") are fatal
558 if 'library(' in ret: # locale-independent key-
word
--> 559 raise ImportError, "%s"%ret
560 else:
561 try:
ImportError: Loading required package: cluster
Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE,
logical.return = TRUE, :
there is no package called 'cluster'
}}}
from
Minh suspects that cluster has not been installed in a
directory where R (the one bundled with Sage) recognizes.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/6532>
Sage <http://sagemath.org/>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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