#17950: make modular_decomposition an optional spkg
-------------------------+-------------------------------------------------
       Reporter:         |        Owner:
  ncohen                 |       Status:  needs_review
           Type:         |    Milestone:  sage-6.6
  enhancement            |   Resolution:
       Priority:  major  |    Merged in:
      Component:  graph  |    Reviewers:
  theory                 |  Work issues:
       Keywords:         |       Commit:
        Authors:         |  0ecbf7ce7bd69bf23c215bb2c03852a29637cfcb
  Nathann Cohen          |     Stopgaps:
Report Upstream:  N/A    |
         Branch:         |
  public/17950           |
   Dependencies:         |
-------------------------+-------------------------------------------------

Comment (by dcoudert):

 Yes I'm using a mac.

 I can reproduce the bug, but it's kind of random. Sometimes its working,
 sometimes not.
 {{{
 confetti:sage dcoudert$ ./sage
 ┌────────────────────────────────────────────────────────────────────┐
 │ Sage Version 6.6.beta5, Release Date: 2015-03-13                   │
 │ Type "notebook()" for the browser-based notebook interface.        │
 │ Type "help()" for help.                                            │
 └────────────────────────────────────────────────────────────────────┘
 ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
 ┃ Warning: this is a prerelease version, and it may be unstable.     ┃
 ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛
 sage: G = graphs.PetersenGraph()
 sage: G.modular_decomposition()
 /Users/dcoudert/sage/src/bin/sage-ipython:1:
 
********************************************************************************
 Graph.modular_decomposition is known to return wrong results
 This issue is being tracked at
 http://trac.sagemath.org/sage_trac/ticket/13744.
 
********************************************************************************
 ------------------------------------------------------------------------
 Unhandled SIGSEGV: A segmentation fault occurred in Sage.
 This probably occurred because a *compiled* component of Sage has a bug
 in it and is not properly wrapped with sig_on(), sig_off().
 Sage will now terminate.
 ------------------------------------------------------------------------
 ./sage: line 134: 17513 Segmentation fault: 11  "$SAGE_ROOT/src/bin/sage"
 "$@"
 confetti:sage dcoudert$ ./sage
 ┌────────────────────────────────────────────────────────────────────┐
 │ Sage Version 6.6.beta5, Release Date: 2015-03-13                   │
 │ Type "notebook()" for the browser-based notebook interface.        │
 │ Type "help()" for help.                                            │
 └────────────────────────────────────────────────────────────────────┘
 ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
 ┃ Warning: this is a prerelease version, and it may be unstable.     ┃
 ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛
 sage: G = graphs.PetersenGraph()
 sage: G.is_prime()
 /Users/dcoudert/sage/local/lib/python2.7/site-
 packages/sage/graphs/graph.py:6524:
 
********************************************************************************
 Graph.modular_decomposition is known to return wrong results
 This issue is being tracked at
 http://trac.sagemath.org/sage_trac/ticket/13744.
 
********************************************************************************
 True
 sage: G.modular_decomposition()
 ('Prime', [('Prime', [2, 6, 3, 9]), 7, 8, 0, 1, 5, 4])
 sage: G = graphs.PetersenGraph()
 sage: G.modular_decomposition()
 ('Prime', [2, 6, 3, 9, 7, 8, 0, 1, 5, 4])
 sage: G.is_prime()
 False
 sage: G.modular_decomposition()
 ('Prime', [('Parallel', [2, 6]), 3, 9, 7, 8, 0, 1, 5, 4])
 sage:
 Exiting Sage (CPU time 0m0.08s, Wall time 0m23.56s).
 confetti:sage dcoudert$ ./sage
 ┌────────────────────────────────────────────────────────────────────┐
 │ Sage Version 6.6.beta5, Release Date: 2015-03-13                   │
 │ Type "notebook()" for the browser-based notebook interface.        │
 │ Type "help()" for help.                                            │
 └────────────────────────────────────────────────────────────────────┘
 ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
 ┃ Warning: this is a prerelease version, and it may be unstable.     ┃
 ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛
 sage: G = graphs.PetersenGraph()
 sage: G.modular_decomposition()
 /Users/dcoudert/sage/src/bin/sage-ipython:1:
 
********************************************************************************
 Graph.modular_decomposition is known to return wrong results
 This issue is being tracked at
 http://trac.sagemath.org/sage_trac/ticket/13744.
 
********************************************************************************
 ------------------------------------------------------------------------
 Unhandled SIGSEGV: A segmentation fault occurred in Sage.
 This probably occurred because a *compiled* component of Sage has a bug
 in it and is not properly wrapped with sig_on(), sig_off().
 Sage will now terminate.
 ------------------------------------------------------------------------
 ./sage: line 134: 17606 Segmentation fault: 11  "$SAGE_ROOT/src/bin/sage"
 "$@"
 ┌────────────────────────────────────────────────────────────────────┐
 │ Sage Version 6.6.beta5, Release Date: 2015-03-13                   │
 │ Type "notebook()" for the browser-based notebook interface.        │
 │ Type "help()" for help.                                            │
 └────────────────────────────────────────────────────────────────────┘
 ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
 ┃ Warning: this is a prerelease version, and it may be unstable.     ┃
 ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛
 sage: G = graphs.PetersenGraph()
 sage: G.is_prime()
 /Users/dcoudert/sage/local/lib/python2.7/site-
 packages/sage/graphs/graph.py:6524:
 
********************************************************************************
 Graph.modular_decomposition is known to return wrong results
 This issue is being tracked at
 http://trac.sagemath.org/sage_trac/ticket/13744.
 
********************************************************************************
 True
 sage: for i in range(1000):
 ....:     G = graphs.RandomBarabasiAlbert(1000,2)
 ....:     _ = G.modular_decomposition()
 ....:
 ------------------------------------------------------------------------
 Unhandled SIGSEGV: A segmentation fault occurred in Sage.
 This probably occurred because a *compiled* component of Sage has a bug
 in it and is not properly wrapped with sig_on(), sig_off().
 Sage will now terminate.
 ------------------------------------------------------------------------
 ./sage: line 134: 17655 Segmentation fault: 11  "$SAGE_ROOT/src/bin/sage"
 "$@"
 ┌────────────────────────────────────────────────────────────────────┐
 │ Sage Version 6.6.beta5, Release Date: 2015-03-13                   │
 │ Type "notebook()" for the browser-based notebook interface.        │
 │ Type "help()" for help.                                            │
 └────────────────────────────────────────────────────────────────────┘
 ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
 ┃ Warning: this is a prerelease version, and it may be unstable.     ┃
 ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛
 sage: G = graphs.PetersenGraph()
 sage: G.is_prime()
 /Users/dcoudert/sage/local/lib/python2.7/site-
 packages/sage/graphs/graph.py:6524:
 
********************************************************************************
 Graph.modular_decomposition is known to return wrong results
 This issue is being tracked at
 http://trac.sagemath.org/sage_trac/ticket/13744.
 
********************************************************************************
 ------------------------------------------------------------------------
 Unhandled SIGSEGV: A segmentation fault occurred in Sage.
 This probably occurred because a *compiled* component of Sage has a bug
 in it and is not properly wrapped with sig_on(), sig_off().
 Sage will now terminate.
 ------------------------------------------------------------------------
 ./sage: line 134: 17703 Segmentation fault: 11  "$SAGE_ROOT/src/bin/sage"
 "$@"
 }}}

--
Ticket URL: <http://trac.sagemath.org/ticket/17950#comment:16>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica, 
and MATLAB

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