#6646: R doctest failed
------------------------+---------------------------------------------------
Reporter: adavid | Owner: was
Type: defect | Status: new
Priority: minor | Milestone: sage-4.1.1
Component: interfaces | Keywords: doctest
Reviewer: | Author:
Merged: |
------------------------+---------------------------------------------------
{{{
sage -t "devel/sage/sage/interfaces/r.py"
**********************************************************************
File "/home/anthonyd/sage-4.1.1.alpha0/devel/sage/sage/interfaces/r.py",
line 83
8:
sage: r.completions('tes')
Expected:
['testPlatformEquivalence', 'testVirtual']
Got:
<BLANKLINE>
Building R command completion list (this takes
a few seconds only the first time you do it).
To force rebuild later, delete
/home/anthonyd/.sage//r_commandlist.sobj.
['testPlatformEquivalence', 'testVirtual']
**********************************************************************
1 items had failures:
1 of 3 in __main__.example_34
***Test Failed*** 1 failures.
For whitespace errors, see the file
/home/anthonyd/sage-4.1.1.alpha0/tmp/.doctest_r.py
cat /home/anthonyd/sage-4.1.1.alpha0/tmp/.doctest_r.py
sage -t "devel/sage/sage/interfaces/r.py"
# -*- coding: utf-8 -*-
from sage.all_cmdline import *;
import sage.plot.plot; sage.plot.plot.DOCTEST_MODE=True
def warning_function(f):
import warnings
def doctest_showwarning(message, category, filename, lineno, file=f,
line=None):
try:
file.write(warnings.formatwarning(message, category,
'doctest', lineno, line))
except IOError:
pass # the file (probably stdout) is invalid
return doctest_showwarning
def change_warning_output(file):
import warnings
warnings.showwarning = warning_function(file)
def example_0(): r""">>> set_random_seed(0L)
>>> change_warning_output(sys.stdout)
T-Test using R
Arguments:
x, y -- vectors of same length
conf_level -- confidence level of the interval, [0,1) in percent
Result:
Tuple: (p-value, R return object)
Example:
>>> a, b =
ttest([Integer(1),Integer(2),Integer(3),Integer(4),Integer(5)],[Integer(1),Integer(2),Integer(3),RealNumber('3.5'),RealNumber('5.121')]);
a###line 30:_sage_ >>> a, b = ttest([1,2,3,4,5],[1,2,3,3.5,5.121]); a
0.941026372027427
"""
if __name__ == '__main__':
verbose = False
do_timeit = False
output_filename =
'/home/anthonyd/sage-4.1.1.alpha0/devel/sage/sage/stats/r.py.timeit.sobj'
import sys
sys.path = sys.path + ['/home/anthonyd/sage-4.1.1.alpha0/local/bin']
import sagedoctest
#
execfile('/home/anthonyd/sage-4.1.1.alpha0/devel/sage/sage/stats/r.py')
m = sys.modules[__name__]
m.__file__ =
'/home/anthonyd/sage-4.1.1.alpha0/devel/sage/sage/stats/r.py'
# configure special sage doc test runner
runner = sagedoctest.SageDocTestRunner(checker=None, verbose=verbose,
optionflags=0)
runner._collect_timeit_stats = do_timeit
runner._reset_random_seed = True
runner = sagedoctest.testmod_returning_runner(m,
#
filename='/home/anthonyd/sage-4.1.1.alpha0/devel/sage/sage/stats/r.py',
verbose=verbose,
globs=globals(),
runner=runner)
runner.save_timeit_stats_to_file_named(output_filename)
quit_sage(verbose=False)
sys.exit(runner.failures)
}}}
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/6646>
Sage <http://sagemath.org/>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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