#18229: Upgrade R to 3.2.0
-------------------------------------+-------------------------------------
Reporter: charpent | Owner: charpent
Type: enhancement | Status: needs_work
Priority: minor | Milestone: sage-6.7
Component: packages: | Resolution:
standard | Merged in:
Keywords: r-project | Reviewers: Vincent Delecroix
Authors: Emmanuel | Work issues:
Charpentier | Commit:
Report Upstream: N/A | ab208a4e69834c786a2f0d4ff5a2626776db4d62
Branch: | Stopgaps:
u/charpent/upgrade_r_to_3_1_3 |
Dependencies: |
-------------------------------------+-------------------------------------
Comment (by fbissey):
Hum, it looks like libR.so has been underlinked
{{{
gcc -std=gnu99 -shared -fopenmp -L/home/buildslave-
sage/slave/sage_git/build/local/lib/ -o libR.so CommandLineArgs.o
Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o
bind.o builtin.o character.o coerce.o colors.o complex.o connections.o
context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o
dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o
format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o
inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o
logic.o main.o mapply.o match.o memory.o names.o objects.o options.o
paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o
printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o
rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o
sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o
times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o
g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o`
../extra/pcre/libpcre.a ../extra/tre/libtre.a ../extra/xz/liblzma.a
-lf77blas -latlas -lgfortran -lm -lquadmath -lreadline -lz -lrt -ldl
-lm
}}}
which would go unnoticed if R.bin was compiled with `-lbzlib`. It looks
like bzip2 was properly detected at configuration so we should be using
the one shipped with sage. I'd ask for the `config.log` but I am fairly
certain I won't see anything abnormal there. Still there could be
something in there that wasn't printed.
--
Ticket URL: <http://trac.sagemath.org/ticket/18229#comment:34>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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