#7019: [with spkg, needs review] update biopython optional package to 1.52
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Reporter: mhampton | Owner: mhampton
Type: enhancement | Status: needs_work
Priority: minor | Milestone: sage-4.1.3
Component: optional packages | Keywords: biopython
Work_issues: | Author:
Reviewer: | Merged:
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Comment(by awebb):
Some suggestions. ;-)
SPKG.txt
{{{
== Description ==
Biopython is a set of freely available tools for biological computation
written in Python by an international team of developers.
It is a distributed collaborative effort to develop Python libraries and
applications which address the needs of current and future work in
bioinformatics.
== License ==
Biopython License
== SPKG Maintainers ==
-- Marshall Hampton, mhampton at d.umn.edu or hamptonio at gmail.com.
== Upstream Contact ==
-- wiki - http://biopython.org/wiki/Main_Page
}}}
spkg-check (keeping biopython as directory name)
{{{
#!/usr/bin/env bash
if [ "$SAGE_LOCAL" = "" ]; then
echo "SAGE_LOCAL undefined ... exiting";
echo "Maybe run 'sage -sh'?"
exit 1
fi
cd biopython
python setup.py test
if [ $? -ne 0 ]; then
echo "Error testing biopython"
exit 1
fi
}}}
I hope this is useful,
Adam
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/7019#comment:6>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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