#20901: Upgrade bliss package to 0.73 with Debian patches; install header files
in
location expected by polymake
-------------------------------------+-------------------------------------
Reporter: mkoeppe | Owner:
Type: defect | Status: needs_work
Priority: major | Milestone: sage-7.3
Component: packages: | Resolution:
optional |
Keywords: | Merged in:
Authors: Matthias Koeppe | Reviewers:
Report Upstream: N/A | Work issues:
Branch: | Commit:
u/mkoeppe/upgrade_bliss_package_to_0_73_with_debian_patches__install_header_files_in_location_expected_by_polymake|
4b222118c057b1f870121951b44f6f851029ec63
Dependencies: | Stopgaps:
-------------------------------------+-------------------------------------
Changes (by mkoeppe):
* status: needs_review => needs_work
Comment:
Unfortunately this update causes some tests to fail with segfault.
{{{
age: sage: g3 = polytopes.hypercube(3).vertex_graph(); g3
Graph on 8 vertices
sage: sage: g3.automorphism_group().cardinality()
python(2197,0x7fff7b8f9000) malloc: *** error for object 0x1001d3fff:
pointer being realloc'd was not allocated
*** set a breakpoint in malloc_error_break to debug
Program received signal SIGABRT, Aborted.
0x00007fff8b2cff06 in __pthread_kill () from
/usr/lib/system/libsystem_kernel.dylib
(gdb) where
#0 0x00007fff8b2cff06 in __pthread_kill () from
/usr/lib/system/libsystem_kernel.dylib
#1 0x00007fff92ea14ec in pthread_kill () from
/usr/lib/system/libsystem_pthread.dylib
#2 0x00007fff8ec5c6e7 in abort () from /usr/lib/system/libsystem_c.dylib
#3 0x00007fff933d879d in realloc () from
/usr/lib/system/libsystem_malloc.dylib
#4 0x0000000107284ddd in __pyx_f_4sage_3ext_6memory_sage_sig_realloc ()
from /Users/mkoeppe/cvs/sage/local/lib/python2.7/site-
packages/sage/ext/memory.so
#5 0x0000000106afca01 in __gmpz_realloc () from
/Users/mkoeppe/cvs/sage/local/lib/libgmp.16.dylib
#6 0x0000000106af8c0e in __gmpz_mul_si () from
/Users/mkoeppe/cvs/sage/local/lib/libgmp.16.dylib
#7 0x00000001aefad6f0 in ?? () from
/Users/mkoeppe/cvs/sage/local/lib/libbliss.2.dylib
#8 0x00000001aefaf43c in ?? () from
/Users/mkoeppe/cvs/sage/local/lib/libbliss.2.dylib
#9 0x00000001aef96e13 in
__pyx_pw_4sage_6graphs_5bliss_1automorphism_group(_object*, _object*,
_object*) ()
from /Users/mkoeppe/cvs/sage/local/lib/python2.7/site-
packages/sage/graphs/bliss.so
#10 0x00000001000e92a4 in PyEval_EvalFrameEx () from
/Users/mkoeppe/cvs/sage/local/lib/libpython2.7.dylib
#
}}}
I could use some help here.
--
Ticket URL: <https://trac.sagemath.org/ticket/20901#comment:14>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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