#9040: fatal relocation error installing R on OpenSolaris
------------------------+---------------------------------------------------
Reporter: drkirkby | Owner: drkirkby
Type: defect | Status: new
Priority: major | Milestone: sage-4.4.3
Component: solaris | Keywords:
Author: | Upstream: None of the above - read trac for
reasoning.
Reviewer: | Merged:
Work_issues: |
------------------------+---------------------------------------------------
== Build environment ==
* Sun Ultra 27 3.33 GHz Intel W3580 Xeon. Quad core. 8 threads. 12 GB RAM
* !OpenSolaris 2009.06 snv_111b X86
* Sage 4.4.2
* gcc 4.4.4
== How gcc 4.4.4 was configured ==
Since the configuration of gcc is fairly critical on !OpenSolaris, here's
how it was built.
{{{
drkir...@hawk:~/sage-4.4.2$ gcc -v
Using built-in specs.
Target: i386-pc-solaris2.11
Configured with: ../gcc-4.4.4/configure --prefix=/usr/local/gcc-4.4.4
--with-as=/usr/local/binutils-2.20/bin/as --with-ld=/usr/ccs/bin/ld
--with-gmp=/usr/local --with-mpfr=/usr/local
Thread model: posix
gcc version 4.4.4 (GCC)
}}}
gcc 4.3.4 was failing to build iconv.
== How the Sage build was attempted ==
* 64-bit build. SAGE64 was set to "yes"
* #9008 update zlib to latest upstream release to allow a 64-bit library
to be built.
* #9009 update mercurial spkg to build 64-bit.
* #7982 update sage_fortran so it can build 64-bit binaries.
* Run 'make -k' so make did not stop on errors, so errors can be listed.
== The problem ==
{{{
make[7]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/lapack'
make[6]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/lapack'
make[5]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/lapack'
make[5]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
make[6]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
make[6]: `Makedeps' is up to date.
make[6]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
make[6]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/export/home/drkirkby/sage-4.4.2/local/include -DHAVE_CONFIG_H -fpic
-I/export/home/drkirkby/sage-4.4.2/local/include
-L/export/home/drkirkby/sage-4.4.2/local/lib/ -O2 -g -m64 -c g_alab_her.c
-o g_alab_her.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/export/home/drkirkby/sage-4.4.2/local/include -DHAVE_CONFIG_H -fpic
-I/export/home/drkirkby/sage-4.4.2/local/include
-L/export/home/drkirkby/sage-4.4.2/local/lib/ -O2 -g -m64 -c g_cntrlify.c
-o g_cntrlify.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/export/home/drkirkby/sage-4.4.2/local/include -DHAVE_CONFIG_H -fpic
-I/export/home/drkirkby/sage-4.4.2/local/include
-L/export/home/drkirkby/sage-4.4.2/local/lib/ -O2 -g -m64 -c g_fontdb.c
-o g_fontdb.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include
-I/export/home/drkirkby/sage-4.4.2/local/include -DHAVE_CONFIG_H -fpic
-I/export/home/drkirkby/sage-4.4.2/local/include
-L/export/home/drkirkby/sage-4.4.2/local/lib/ -O2 -g -m64 -c
g_her_glyph.c -o g_her_glyph.o
gcc -std=gnu99 -G -L/export/home/drkirkby/sage-4.4.2/local/lib/ -m64 -o
vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o
-L../../../lib -lR -lm
make[7]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
make[7]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
make[6]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
make[5]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules/vfonts'
make[4]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/modules'
make[4]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library'
mkdir ../../library
make[5]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library/profile'
building system startup profile
mkdir ../../../library/base
mkdir ../../../library/base/R
make[5]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library/profile'
make[5]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library/base'
building package 'base'
make[6]: Entering directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library/base'
mkdir ../../../library/base/demo
mkdir ../../../library/base/po
make[6]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library/base'
ld.so.1: R: fatal: relocation error: R_AMD64_PC32: file
/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/lib/libR.so:
symbol _init: value 0x228000984acd does not fit
/bin/sh: line 1: 3520: Killed
make[5]: *** [all] Killed
make[5]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library/base'
make[4]: *** [R] Error 1
make[4]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src/library'
make[3]: *** [R] Error 1
make[3]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src/src'
make[2]: *** [R] Error 1
make[2]: Leaving directory
`/export/home/drkirkby/sage-4.4.2/spkg/build/r-2.10.1.p1/src'
Error building R.
real 2m34.249s
user 2m6.818s
sys 0m23.514s
sage: An error occurred while installing r-2.10.1.p1
}}}
I will try to build R outside of Sage next.
Other !OpenSolaris issues are shown at #9026
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9040>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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