#10866: Optional package openmpi-1.4.3 fails to install on OpenSolaris 06/2009
with
gcc (OK with Sun compiler)
---------------------------------+------------------------------------------
Reporter: drkirkby | Owner: tbd
Type: defect | Status: new
Priority: major | Milestone: sage-4.7
Component: optional packages | Keywords:
Author: | Upstream: N/A
Reviewer: | Merged:
Work_issues: |
---------------------------------+------------------------------------------
Description changed by drkirkby:
Old description:
> == Build environment ==
> * Sun Ultra 27
> * 3.33 GHz Intel W3580 Xeon. Quad core. 8 threads.
> * 12 GB RAM
> * !OpenSolaris 2009.06 snv_134 X86
> * Sage 4.6.2.rc0
> * gcc 4.5.0
>
> == How gcc 4.5.0 was configured ==
> Since the configuration of gcc is fairly critical on !OpenSolaris, here's
> how it was built.
>
> {{{
> drkirkby@hawk:~/sage-4.6.2.rc0$ gcc -v
> Using built-in specs.
> COLLECT_GCC=/usr/local/gcc-4.5.0/bin/gcc
> COLLECT_LTO_WRAPPER=/usr/local/gcc-4.5.0/libexec/gcc/i386-pc-
> solaris2.10/4.5.0/lto-wrapper
> Target: i386-pc-solaris2.10
> Configured with: ../gcc-4.5.0/configure --prefix=/usr/local/gcc-4.5.0
> --build=i386-pc-solaris2.10 --enable-languages=c,c++,fortran --with-
> gmp=/usr/local/gcc-4.5.0 --with-mpfr=/usr/local/gcc-4.5.0 --disable-nls
> --enable-checking=release --enable-werror=no --enable-multilib -with-
> system-zlib --enable-bootstrap --with-gnu-as --with-
> as=/usr/local/binutils-2.20/bin/as --without-gnu-ld --with-
> ld=/usr/ccs/bin/ld
> Thread model: posix
> gcc version 4.5.0 (GCC)
> drkirkby@hawk:~/sage-4.6.2.rc0$
>
> }}}
>
> == A bit of history on Solaris and OpenMPI issues in Sage ==
>
> I don't believe this optional OpenMPI package in Sage has ever built on
> Solaris SPARC - see #8522 Updating OpenMPI (#8537) did not fix the
> problems. I know that we have never built this optional package on
> !OpenSolaris.
>
> == The problem with the current version in Sage ==
>
> {{{
> Creating mpi/man/man3/MPI_Type_c2f.3 man page...
> Creating mpi/man/man3/MPI_Type_commit.3 man page...
> Creating mpi/man/man3/MPI_Type_contiguous.3 man page...
> Creating mpi/man/man3/MPI_Type_create_darray.3 man page...
> Creating mpi/man/man3/MPI_Type_create_f90_complex.3 man page...
> Creating mpi/man/man3/MPI_Type_create_f90_integer.3 man page...
> Creating mpi/man/man3/MPI_Type_create_f90_real.3 man page...
> Creating mpi/man/man3/MPI_Type_create_hindexed.3 man page...
> Creating mpi/man/man3/MPI_Type_create_hvector.3 man page...
> Creating mpi/man/man3/MPI_Type_create_indexed_block.3 man page...
> Creating mpi/man/man3/MPI_Type_create_keyval.3 man page...
> Creating mpi/man/man3/MPI_Type_create_resized.3 man page...
> Creating mpi/man/man3/MPI_Type_create_struct.3 man page...
> Creating mpi/man/man3/MPI_Type_create_subarray.3 man page...
> Creating mpi/man/man3/MPI_Type_delete_attr.3 man page...
> Creating mpi/man/man3/MPI_Type_dup.3 man page...
> Creating mpi/man/man3/MPI_Type_extent.3 man page...
> Creating mpi/man/man3/MPI_Type_f2c.3 man page...
> Creating mpi/man/man3/MPI_Type_free.3 man page...
> Creating mpi/man/man3/MPI_Type_free_keyval.3 man page...
> Creating mpi/man/man3/MPI_Type_get_attr.3 man page...
> Creating mpi/man/man3/MPI_Type_get_contents.3 man page...
> Creating mpi/man/man3/MPI_Type_get_envelope.3 man page...
> Creating mpi/man/man3/MPI_Type_get_extent.3 man page...
> Creating mpi/man/man3/MPI_Type_get_name.3 man page...
> Creating mpi/man/man3/MPI_Type_get_true_extent.3 man page...
> Creating mpi/man/man3/MPI_Type_hindexed.3 man page...
> Creating mpi/man/man3/MPI_Type_hvector.3 man page...
> Creating mpi/man/man3/MPI_Type_indexed.3 man page...
> Creating mpi/man/man3/MPI_Type_lb.3 man page...
> Creating mpi/man/man3/MPI_Type_match_size.3 man page...
> Creating mpi/man/man3/MPI_Type_set_attr.3 man page...
> Creating mpi/man/man3/MPI_Type_set_name.3 man page...
> Creating mpi/man/man3/MPI_Type_size.3 man page...
> Creating mpi/man/man3/MPI_Type_struct.3 man page...
> Creating mpi/man/man3/MPI_Type_ub.3 man page...
> Creating mpi/man/man3/MPI_Type_vector.3 man page...
> Creating mpi/man/man3/MPI_Unpack.3 man page...
> Creating mpi/man/man3/MPI_Unpack_external.3 man page...
> Creating mpi/man/man3/MPI_Unpublish_name.3 man page...
> Creating mpi/man/man3/MPI_Wait.3 man page...
> Creating mpi/man/man3/MPI_Waitall.3 man page...
> Creating mpi/man/man3/MPI_Waitany.3 man page...
> Creating mpi/man/man3/MPI_Waitsome.3 man page...
> Creating mpi/man/man3/MPI_Win_c2f.3 man page...
> Creating mpi/man/man3/MPI_Win_call_errhandler.3 man page...
> Creating mpi/man/man3/MPI_Win_complete.3 man page...
> Creating mpi/man/man3/MPI_Win_create.3 man page...
> Creating mpi/man/man3/MPI_Win_create_errhandler.3 man page...
> Creating mpi/man/man3/MPI_Win_create_keyval.3 man page...
> Creating mpi/man/man3/MPI_Win_delete_attr.3 man page...
> Creating mpi/man/man3/MPI_Win_f2c.3 man page...
> Creating mpi/man/man3/MPI_Win_fence.3 man page...
> Creating mpi/man/man3/MPI_Win_free.3 man page...
> Creating mpi/man/man3/MPI_Win_free_keyval.3 man page...
> Creating mpi/man/man3/MPI_Win_get_attr.3 man page...
> Creating mpi/man/man3/MPI_Win_get_errhandler.3 man page...
> Creating mpi/man/man3/MPI_Win_get_group.3 man page...
> Creating mpi/man/man3/MPI_Win_get_name.3 man page...
> Creating mpi/man/man3/MPI_Win_lock.3 man page...
> Creating mpi/man/man3/MPI_Win_post.3 man page...
> Creating mpi/man/man3/MPI_Win_set_attr.3 man page...
> Creating mpi/man/man3/MPI_Win_set_errhandler.3 man page...
> Creating mpi/man/man3/MPI_Win_set_name.3 man page...
> Creating mpi/man/man3/MPI_Win_start.3 man page...
> Creating mpi/man/man3/MPI_Win_test.3 man page...
> Creating mpi/man/man3/MPI_Win_unlock.3 man page...
> Creating mpi/man/man3/MPI_Win_wait.3 man page...
> Creating mpi/man/man3/MPI_Wtick.3 man page...
> Creating mpi/man/man3/MPI_Wtime.3 man page...
> Creating mpi/man/man3/OpenMPI.3 man page...
> make[2]: Leaving directory
> `/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi'
> Making all in mpi/cxx
> make[2]: Entering directory
> `/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi/mpi/cxx'
> depbase=`echo mpicxx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
> /bin/sh ../../../libtool --tag=CXX --mode=compile g++
> -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
> -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT mpicxx.lo -MD -MP -MF
> $depbase.Tpo -c -o mpicxx.lo mpicxx.cc &&\
> mv -f $depbase.Tpo $depbase.Plo
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
> -I../../../orte/include -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT mpicxx.lo -MD -MP -MF
> .deps/mpicxx.Tpo -c mpicxx.cc -fPIC -DPIC -o .libs/mpicxx.o
> depbase=`echo intercepts.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
> /bin/sh ../../../libtool --tag=CXX --mode=compile g++
> -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
> -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT intercepts.lo -MD -MP
> -MF $depbase.Tpo -c -o intercepts.lo intercepts.cc &&\
> mv -f $depbase.Tpo $depbase.Plo
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
> -I../../../orte/include -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT intercepts.lo -MD -MP
> -MF .deps/intercepts.Tpo -c intercepts.cc -fPIC -DPIC -o
> .libs/intercepts.o
> depbase=`echo comm.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
> /bin/sh ../../../libtool --tag=CXX --mode=compile g++
> -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
> -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT comm.lo -MD -MP -MF
> $depbase.Tpo -c -o comm.lo comm.cc &&\
> mv -f $depbase.Tpo $depbase.Plo
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
> -I../../../orte/include -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT comm.lo -MD -MP -MF
> .deps/comm.Tpo -c comm.cc -fPIC -DPIC -o .libs/comm.o
> depbase=`echo datatype.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
> /bin/sh ../../../libtool --tag=CXX --mode=compile g++
> -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
> -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT datatype.lo -MD -MP
> -MF $depbase.Tpo -c -o datatype.lo datatype.cc &&\
> mv -f $depbase.Tpo $depbase.Plo
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
> -I../../../orte/include -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT datatype.lo -MD -MP -MF
> .deps/datatype.Tpo -c datatype.cc -fPIC -DPIC -o .libs/datatype.o
> depbase=`echo win.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
> /bin/sh ../../../libtool --tag=CXX --mode=compile g++
> -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
> -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT win.lo -MD -MP -MF
> $depbase.Tpo -c -o win.lo win.cc &&\
> mv -f $depbase.Tpo $depbase.Plo
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
> -I../../../orte/include -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT win.lo -MD -MP -MF
> .deps/win.Tpo -c win.cc -fPIC -DPIC -o .libs/win.o
> depbase=`echo file.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
> /bin/sh ../../../libtool --tag=CXX --mode=compile g++
> -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
> -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT file.lo -MD -MP -MF
> $depbase.Tpo -c -o file.lo file.cc &&\
> mv -f $depbase.Tpo $depbase.Plo
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
> -I../../../orte/include -I../../../ompi/include
> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
> -DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
> -D_REENTRANT -O3 -DNDEBUG -finline-functions -MT file.lo -MD -MP -MF
> .deps/file.Tpo -c file.cc -fPIC -DPIC -o .libs/file.o
> /bin/sh ../../../libtool --tag=CXX --mode=link g++ -O3 -DNDEBUG
> -finline-functions -version-info 0:1:0 -export-dynamic -o
> libmpi_cxx.la -rpath /export/home/drkirkby/sage-4.6.2.rc0/local/lib
> mpicxx.lo intercepts.lo comm.lo datatype.lo win.lo file.lo
> ../../../ompi/libmpi.la -lsocket -lnsl -lm -lthread
> libtool: link: g++ -shared -nostdlib -export-dynamic /usr/lib/crti.o
> /usr/lib/values-Xa.o /usr/local/gcc-4.5.0/lib/gcc/i386-pc-
> solaris2.10/4.5.0/crtbegin.o .libs/mpicxx.o .libs/intercepts.o
> .libs/comm.o .libs/datatype.o .libs/win.o .libs/file.o -Wl,-R
> -Wl,/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi/.libs
> -Wl,-R
> -Wl,/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/orte/.libs
> -Wl,-R
> -Wl,/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/opal/.libs
> -Wl,-R -Wl,/usr/local/gcc-4.5.0/lib -Wl,-R
> -Wl,/export/home/drkirkby/sage-4.6.2.rc0/local/lib -Wl,-R
> -Wl,/usr/local/gcc-4.5.0/lib
> -L/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/orte/.libs
> -L/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/opal/.libs
> ../../../ompi/.libs/libmpi.so
> /export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/orte/.libs
> /libopen-rte.so
> /export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/opal/.libs
> /libopen-pal.so -lsocket -lnsl -lthread
> -L/export/home/drkirkby/sage-4.6.2.rc0/local/lib
> -L/usr/local/gcc-4.5.0/lib/gcc/i386-pc-solaris2.10/4.5.0
> -L/usr/local/gcc-4.5.0/lib/gcc/i386-pc-solaris2.10/4.5.0/../../..
> /usr/local/gcc-4.5.0/lib/libstdc++.so -lm -lgcc_s
> /usr/local/gcc-4.5.0/lib/gcc/i386-pc-solaris2.10/4.5.0/crtend.o
> /usr/lib/crtn.o -Wl,-h -Wl,libmpi_cxx.so.0 -o
> .libs/libmpi_cxx.so.0.0.1
> ld: fatal: entry point symbol `xport-dynamic' is undefined
> collect2: ld returned 1 exit status
> make[2]: *** [libmpi_cxx.la] Error 1
> make[2]: Leaving directory
> `/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi/mpi/cxx'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory
> `/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi'
> make: *** [all-recursive] Error 1
> Error building
>
> real 2m44.506s
> user 1m38.124s
> sys 1m0.653s
> sage: An error occurred while installing openmpi-1.4.3
>
> }}}
>
> == Hints found with Google ==
> The Google search on the error message
>
> {{{
> ld: fatal: entry point symbol `xport-dynamic' is undefined
> }}}
>
> throws up quite a few hits with a few pieces of software (not MPI
> related). E.g.
>
> * Ethereal http://www.ethereal.com/lists/ethereal-
> users/200309/msg00162.html
> * GnuPG http://lists.gnupg.org/pipermail/gnupg-
> devel/1998-December/015163.html
>
> Dave
New description:
== Build environment ==
* Sun Ultra 27
* 3.33 GHz Intel W3580 Xeon. Quad core. 8 threads.
* 12 GB RAM
* !OpenSolaris 2009.06 snv_134 X86
* Sage 4.6.2.rc0
* gcc 4.5.0
== How gcc 4.5.0 was configured ==
Since the configuration of gcc is fairly critical on !OpenSolaris, here's
how it was built.
{{{
drkirkby@hawk:~/sage-4.6.2.rc0$ gcc -v
Using built-in specs.
COLLECT_GCC=/usr/local/gcc-4.5.0/bin/gcc
COLLECT_LTO_WRAPPER=/usr/local/gcc-4.5.0/libexec/gcc/i386-pc-
solaris2.10/4.5.0/lto-wrapper
Target: i386-pc-solaris2.10
Configured with: ../gcc-4.5.0/configure --prefix=/usr/local/gcc-4.5.0
--build=i386-pc-solaris2.10 --enable-languages=c,c++,fortran --with-
gmp=/usr/local/gcc-4.5.0 --with-mpfr=/usr/local/gcc-4.5.0 --disable-nls
--enable-checking=release --enable-werror=no --enable-multilib -with-
system-zlib --enable-bootstrap --with-gnu-as --with-
as=/usr/local/binutils-2.20/bin/as --without-gnu-ld --with-
ld=/usr/ccs/bin/ld
Thread model: posix
gcc version 4.5.0 (GCC)
drkirkby@hawk:~/sage-4.6.2.rc0$
}}}
== A bit of history on Solaris and OpenMPI issues in Sage ==
I don't believe this optional OpenMPI package in Sage has ever built on
Solaris SPARC - see #8522 Updating OpenMPI (#8537) did not fix the
problems. I know that we have never built this optional package on
!OpenSolaris.
== The problem with the current version in Sage ==
{{{
Creating mpi/man/man3/MPI_Type_c2f.3 man page...
Creating mpi/man/man3/MPI_Type_commit.3 man page...
Creating mpi/man/man3/MPI_Type_contiguous.3 man page...
Creating mpi/man/man3/MPI_Type_create_darray.3 man page...
Creating mpi/man/man3/MPI_Type_create_f90_complex.3 man page...
Creating mpi/man/man3/MPI_Type_create_f90_integer.3 man page...
Creating mpi/man/man3/MPI_Type_create_f90_real.3 man page...
Creating mpi/man/man3/MPI_Type_create_hindexed.3 man page...
Creating mpi/man/man3/MPI_Type_create_hvector.3 man page...
Creating mpi/man/man3/MPI_Type_create_indexed_block.3 man page...
Creating mpi/man/man3/MPI_Type_create_keyval.3 man page...
Creating mpi/man/man3/MPI_Type_create_resized.3 man page...
Creating mpi/man/man3/MPI_Type_create_struct.3 man page...
Creating mpi/man/man3/MPI_Type_create_subarray.3 man page...
Creating mpi/man/man3/MPI_Type_delete_attr.3 man page...
Creating mpi/man/man3/MPI_Type_dup.3 man page...
Creating mpi/man/man3/MPI_Type_extent.3 man page...
Creating mpi/man/man3/MPI_Type_f2c.3 man page...
Creating mpi/man/man3/MPI_Type_free.3 man page...
Creating mpi/man/man3/MPI_Type_free_keyval.3 man page...
Creating mpi/man/man3/MPI_Type_get_attr.3 man page...
Creating mpi/man/man3/MPI_Type_get_contents.3 man page...
Creating mpi/man/man3/MPI_Type_get_envelope.3 man page...
Creating mpi/man/man3/MPI_Type_get_extent.3 man page...
Creating mpi/man/man3/MPI_Type_get_name.3 man page...
Creating mpi/man/man3/MPI_Type_get_true_extent.3 man page...
Creating mpi/man/man3/MPI_Type_hindexed.3 man page...
Creating mpi/man/man3/MPI_Type_hvector.3 man page...
Creating mpi/man/man3/MPI_Type_indexed.3 man page...
Creating mpi/man/man3/MPI_Type_lb.3 man page...
Creating mpi/man/man3/MPI_Type_match_size.3 man page...
Creating mpi/man/man3/MPI_Type_set_attr.3 man page...
Creating mpi/man/man3/MPI_Type_set_name.3 man page...
Creating mpi/man/man3/MPI_Type_size.3 man page...
Creating mpi/man/man3/MPI_Type_struct.3 man page...
Creating mpi/man/man3/MPI_Type_ub.3 man page...
Creating mpi/man/man3/MPI_Type_vector.3 man page...
Creating mpi/man/man3/MPI_Unpack.3 man page...
Creating mpi/man/man3/MPI_Unpack_external.3 man page...
Creating mpi/man/man3/MPI_Unpublish_name.3 man page...
Creating mpi/man/man3/MPI_Wait.3 man page...
Creating mpi/man/man3/MPI_Waitall.3 man page...
Creating mpi/man/man3/MPI_Waitany.3 man page...
Creating mpi/man/man3/MPI_Waitsome.3 man page...
Creating mpi/man/man3/MPI_Win_c2f.3 man page...
Creating mpi/man/man3/MPI_Win_call_errhandler.3 man page...
Creating mpi/man/man3/MPI_Win_complete.3 man page...
Creating mpi/man/man3/MPI_Win_create.3 man page...
Creating mpi/man/man3/MPI_Win_create_errhandler.3 man page...
Creating mpi/man/man3/MPI_Win_create_keyval.3 man page...
Creating mpi/man/man3/MPI_Win_delete_attr.3 man page...
Creating mpi/man/man3/MPI_Win_f2c.3 man page...
Creating mpi/man/man3/MPI_Win_fence.3 man page...
Creating mpi/man/man3/MPI_Win_free.3 man page...
Creating mpi/man/man3/MPI_Win_free_keyval.3 man page...
Creating mpi/man/man3/MPI_Win_get_attr.3 man page...
Creating mpi/man/man3/MPI_Win_get_errhandler.3 man page...
Creating mpi/man/man3/MPI_Win_get_group.3 man page...
Creating mpi/man/man3/MPI_Win_get_name.3 man page...
Creating mpi/man/man3/MPI_Win_lock.3 man page...
Creating mpi/man/man3/MPI_Win_post.3 man page...
Creating mpi/man/man3/MPI_Win_set_attr.3 man page...
Creating mpi/man/man3/MPI_Win_set_errhandler.3 man page...
Creating mpi/man/man3/MPI_Win_set_name.3 man page...
Creating mpi/man/man3/MPI_Win_start.3 man page...
Creating mpi/man/man3/MPI_Win_test.3 man page...
Creating mpi/man/man3/MPI_Win_unlock.3 man page...
Creating mpi/man/man3/MPI_Win_wait.3 man page...
Creating mpi/man/man3/MPI_Wtick.3 man page...
Creating mpi/man/man3/MPI_Wtime.3 man page...
Creating mpi/man/man3/OpenMPI.3 man page...
make[2]: Leaving directory
`/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi'
Making all in mpi/cxx
make[2]: Entering directory
`/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi/mpi/cxx'
depbase=`echo mpicxx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CXX --mode=compile g++
-DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT mpicxx.lo -MD -MP -MF
$depbase.Tpo -c -o mpicxx.lo mpicxx.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
-I../../../orte/include -I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT mpicxx.lo -MD -MP -MF
.deps/mpicxx.Tpo -c mpicxx.cc -fPIC -DPIC -o .libs/mpicxx.o
depbase=`echo intercepts.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CXX --mode=compile g++
-DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT intercepts.lo -MD -MP
-MF $depbase.Tpo -c -o intercepts.lo intercepts.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
-I../../../orte/include -I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT intercepts.lo -MD -MP -MF
.deps/intercepts.Tpo -c intercepts.cc -fPIC -DPIC -o .libs/intercepts.o
depbase=`echo comm.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CXX --mode=compile g++
-DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT comm.lo -MD -MP -MF
$depbase.Tpo -c -o comm.lo comm.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
-I../../../orte/include -I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT comm.lo -MD -MP -MF
.deps/comm.Tpo -c comm.cc -fPIC -DPIC -o .libs/comm.o
depbase=`echo datatype.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CXX --mode=compile g++
-DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT datatype.lo -MD -MP -MF
$depbase.Tpo -c -o datatype.lo datatype.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
-I../../../orte/include -I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT datatype.lo -MD -MP -MF
.deps/datatype.Tpo -c datatype.cc -fPIC -DPIC -o .libs/datatype.o
depbase=`echo win.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CXX --mode=compile g++
-DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT win.lo -MD -MP -MF
$depbase.Tpo -c -o win.lo win.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
-I../../../orte/include -I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT win.lo -MD -MP -MF
.deps/win.Tpo -c win.cc -fPIC -DPIC -o .libs/win.o
depbase=`echo file.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CXX --mode=compile g++
-DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT file.lo -MD -MP -MF
$depbase.Tpo -c -o file.lo file.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../opal/include
-I../../../orte/include -I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-DOMPI_BUILDING_CXX_BINDINGS_LIBRARY=1 -DOMPI_SKIP_MPICXX=1 -I../../..
-D_REENTRANT -O3 -DNDEBUG -finline-functions -MT file.lo -MD -MP -MF
.deps/file.Tpo -c file.cc -fPIC -DPIC -o .libs/file.o
/bin/sh ../../../libtool --tag=CXX --mode=link g++ -O3 -DNDEBUG
-finline-functions -version-info 0:1:0 -export-dynamic -o libmpi_cxx.la
-rpath /export/home/drkirkby/sage-4.6.2.rc0/local/lib mpicxx.lo
intercepts.lo comm.lo datatype.lo win.lo file.lo ../../../ompi/libmpi.la
-lsocket -lnsl -lm -lthread
libtool: link: g++ -shared -nostdlib -export-dynamic /usr/lib/crti.o
/usr/lib/values-Xa.o /usr/local/gcc-4.5.0/lib/gcc/i386-pc-
solaris2.10/4.5.0/crtbegin.o .libs/mpicxx.o .libs/intercepts.o
.libs/comm.o .libs/datatype.o .libs/win.o .libs/file.o -Wl,-R
-Wl,/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi/.libs
-Wl,-R
-Wl,/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/orte/.libs
-Wl,-R
-Wl,/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/opal/.libs
-Wl,-R -Wl,/usr/local/gcc-4.5.0/lib -Wl,-R
-Wl,/export/home/drkirkby/sage-4.6.2.rc0/local/lib -Wl,-R
-Wl,/usr/local/gcc-4.5.0/lib
-L/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/orte/.libs
-L/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/opal/.libs
../../../ompi/.libs/libmpi.so
/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/orte/.libs
/libopen-rte.so
/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/opal/.libs
/libopen-pal.so -lsocket -lnsl -lthread
-L/export/home/drkirkby/sage-4.6.2.rc0/local/lib
-L/usr/local/gcc-4.5.0/lib/gcc/i386-pc-solaris2.10/4.5.0
-L/usr/local/gcc-4.5.0/lib/gcc/i386-pc-solaris2.10/4.5.0/../../..
/usr/local/gcc-4.5.0/lib/libstdc++.so -lm -lgcc_s
/usr/local/gcc-4.5.0/lib/gcc/i386-pc-solaris2.10/4.5.0/crtend.o
/usr/lib/crtn.o -Wl,-h -Wl,libmpi_cxx.so.0 -o .libs/libmpi_cxx.so.0.0.1
ld: fatal: entry point symbol `xport-dynamic' is undefined
collect2: ld returned 1 exit status
make[2]: *** [libmpi_cxx.la] Error 1
make[2]: Leaving directory
`/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi/mpi/cxx'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/export/home/drkirkby/sage-4.6.2.rc0/spkg/build/openmpi-1.4.3/src/ompi'
make: *** [all-recursive] Error 1
Error building
real 2m44.506s
user 1m38.124s
sys 1m0.653s
sage: An error occurred while installing openmpi-1.4.3
}}}
== Hints found with Google ==
The Google search on the error message
{{{
ld: fatal: entry point symbol `xport-dynamic' is undefined
}}}
throws up quite a few hits with a few pieces of software (not MPI
related). E.g.
* Ethereal http://www.ethereal.com/lists/ethereal-
users/200309/msg00162.html
* GnuPG http://lists.gnupg.org/pipermail/gnupg-
devel/1998-December/015163.html
== Building OpenMPI with the Sun compiler ==
Although I've not tried using it, setting
{{{
$ export CC=cc
$ export CXX=CC
$ ./sage -i openmpi
<snip>
real 9m5.997s
user 6m6.539s
sys 2m42.022s
Successfully installed openmpi-1.4.3
}}}
so this does build with the Sun compiler, but not with gcc. I've no idea
if this combination actually works though, as I don't know how to test it.
Dave
--
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/10866#comment:1>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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