#9858: FLINT 1.5.0.p5's test suite fails to build with new GMP/MPIR
------------------------+---------------------------------------------------
Reporter: leif | Owner: leif
Type: defect | Status: needs_review
Priority: critical | Milestone: sage-4.7.3
Component: packages | Keywords: SAGE_CHECK mpz_random
Work_issues: | Upstream: N/A
Reviewer: | Author: Leif Leonhardy
Merged: | Dependencies:
------------------------+---------------------------------------------------
Changes (by newvalueoldvalue):
* cc: davidloeffler (added)
* status: new => needs_review
* author: => Leif Leonhardy
Old description:
> Due to the use of deprecated/obsolete GMP functions, the test suite of
> flint-1.5.0.p5 fails to build since merging the new MPIR 2.1.3 (#8664),
> or if one uses any other recent version of MPIR or GMP. This means that
> the package's installation fails if {{{SAGE_CHECK=yes}}}:
>
> {{{
> Successfully installed flint-1.5.0.p5
> Running the test suite.
> *************************************************
> Running test suite. This should take 6-20 minutes
> Please report all failures to sage-devel
> *************************************************
> gcc -std=c99
> -I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include/
> -I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baselin
> e/local/include -mtune=opteron -march=opteron -fPIC -funroll-loops -O2
> -c F_mpz-test.c -o F_mpz-test.o
> [...]
> gcc -std=c99
> -I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include/
> -I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include
> -mtune=opteron -march=opteron -fPIC -funroll-loops -O2 -c fmpz-test.c -o
> fmpz-test.o
> fmpz-test.c: In function âtest___fmpz_normaliseâ:
> fmpz-test.c:1379:8: warning: implicit declaration of function
> âmpz_randomâ
> g++
> -I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include/
> -I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include
> -mtune=opteron -march=opteron -fPIC -funroll-loops -O2 fmpz-test.o test-
> support.o -o fmpz-test zn_mod.o misc.o mul_ks.o pack.o mul.o mulmid.o
> mulmid_ks.o ks_support.o mpn_mulmid.o nuss.o pmf.o pmfvec_fft.o tuning.o
> mul_fft.o mul_fft_dft.o array.o invert.o mpn_extras.o mpz_extras.o
> memory-manager.o ZmodF.o ZmodF_mul.o ZmodF_mul-tuning.o fmpz.o
> fmpz_poly.o mpz_poly-tuning.o mpz_poly.o ZmodF_poly.o long_extras.o
> zmod_poly.o theta.o zmod_mat.o F_mpz.o tinyQS.o factor_base.o poly.o
> sieve.o linear_algebra.o block_lanczos.o NTL-interface.o
> -L/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/lib/
> -L/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/lib/ -lgmp
> -lpthread -lntl -lm
> fmpz-test.o: In function `test___fmpz_normalise':
> fmpz-test.c:(.text+0x368d): undefined reference to `mpz_random'
> collect2: ld returned 1 exit status
> make: *** [fmpz-test] Error 1
> Error building the test suite for FLINT
> *************************************
> Error testing package ** flint-1.5.0.p5 **
> *************************************
> sage: An error occurred while testing flint-1.5.0.p5
> }}}
>
> I guess Bill has already fixed that in FLINT 1.5.2, which was released
> over a year ago. So simply updating the spkg might suffice.
>
> Btw, at least the current FLINT in Sage ignores user-provided
> {{{CFLAGS}}}; one could perhaps "move" them into some other environment
> variable used by FLINT.
>
> ----
>
> Upstream: http://www.flintlib.org/
New description:
Due to the use of deprecated/obsolete GMP functions, the test suite of
flint-1.5.0.p5 fails to build since merging the new MPIR 2.1.3 (#8664), or
if one uses any other recent version of MPIR or GMP. This means that the
package's installation fails if {{{SAGE_CHECK=yes}}}:
{{{
Successfully installed flint-1.5.0.p5
Running the test suite.
*************************************************
Running test suite. This should take 6-20 minutes
Please report all failures to sage-devel
*************************************************
gcc -std=c99
-I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include/
-I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baselin
e/local/include -mtune=opteron -march=opteron -fPIC -funroll-loops -O2 -c
F_mpz-test.c -o F_mpz-test.o
[...]
gcc -std=c99
-I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include/
-I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include
-mtune=opteron -march=opteron -fPIC -funroll-loops -O2 -c fmpz-test.c -o
fmpz-test.o
fmpz-test.c: In function âtest___fmpz_normaliseâ:
fmpz-test.c:1379:8: warning: implicit declaration of function âmpz_randomâ
g++
-I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include/
-I/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/include
-mtune=opteron -march=opteron -fPIC -funroll-loops -O2 fmpz-test.o test-
support.o -o fmpz-test zn_mod.o misc.o mul_ks.o pack.o mul.o mulmid.o
mulmid_ks.o ks_support.o mpn_mulmid.o nuss.o pmf.o pmfvec_fft.o tuning.o
mul_fft.o mul_fft_dft.o array.o invert.o mpn_extras.o mpz_extras.o memory-
manager.o ZmodF.o ZmodF_mul.o ZmodF_mul-tuning.o fmpz.o fmpz_poly.o
mpz_poly-tuning.o mpz_poly.o ZmodF_poly.o long_extras.o zmod_poly.o
theta.o zmod_mat.o F_mpz.o tinyQS.o factor_base.o poly.o sieve.o
linear_algebra.o block_lanczos.o NTL-interface.o
-L/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/lib/
-L/mnt/usb1/scratch/jdemeyer/sage-4.7.2.alpha3-baseline/local/lib/ -lgmp
-lpthread -lntl -lm
fmpz-test.o: In function `test___fmpz_normalise':
fmpz-test.c:(.text+0x368d): undefined reference to `mpz_random'
collect2: ld returned 1 exit status
make: *** [fmpz-test] Error 1
Error building the test suite for FLINT
*************************************
Error testing package ** flint-1.5.0.p5 **
*************************************
sage: An error occurred while testing flint-1.5.0.p5
}}}
I guess Bill has already fixed that in FLINT 1.5.2, which was released
over a year ago. So simply updating the spkg might suffice.
Btw, at least the current FLINT in Sage ignores user-provided
{{{CFLAGS}}}; one could perhaps "move" them into some other environment
variable used by FLINT.
----
Upstream: http://www.flintlib.org/
----
'''New spkg:'''
[http://sage.math.washington.edu/home/leif/Sage/spkgs/flint-1.5.0.p10.spkg]
'''md5sum:''' `907a720d1b9bf9e4bc1412e08b2f8892`
=== flint-1.5.0.p10 (Leif Leonhardy, October 11th 2011) ===
* #9858: Add an upstream patch from FLINT 1.5.2 to make FLINT's test
suite
build (when `SAGE_CHECK=yes`) with MPIR 1.3.x, 2.x (cf. #8664) and GMP
5.x.
The patch just substitutes deprecated random functions in one file
(`fmpz-test.c`) which have been removed from the mentioned GMP / MPIR
versions.
--
Comment:
I've made a FLINT 1.5.0.p10 spkg which just fixes the trivial test suite
build error (see the ticket's description), since providing a ''clean''
FLINT 1.5.2 spkg based on the 1.5.0.p9 is tedious and still takes some
time, hopefully just until tomorrow.
Please test (with `SAGE_CHECK=yes` of course, and an MPIR >=1.3.x or GMP
5.x, e.g. with Sage 4.7.2.alpha'''3''') and review!
(Unless you're happy with unmerging the overdue MPIR upgrade from Sage
4.7.2 just for this reason.)
Thanks in advance.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9858#comment:14>
Sage <http://www.sagemath.org>
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