#12057: Upgrade R (r-project.org)
---------------------------+------------------------------------------------
   Reporter:  vbraun       |          Owner:  amhou                            
       Type:  enhancement  |         Status:  needs_review                     
   Priority:  critical     |      Milestone:  sage-4.8                         
  Component:  statistics   |       Keywords:  R spkg r-project graphics PNG X11
Work_issues:               |       Upstream:  N/A                              
   Reviewer:               |         Author:  Volker Braun                     
     Merged:               |   Dependencies:                                   
---------------------------+------------------------------------------------

Old description:

> The current version of R (r-project) disables graphics if no X11 is
> available even though `r.capabilities()` states that PNG is enabled. But
> you can't generate PNGs, which is why R graphics is broken in the Sage
> virtual machine. This is fixed in the newest upstream version, of which I
> made a new spkg.
>
> http://www.stp.dias.ie/~vbraun/Sage/spkg/r-2.14.0.p0.spkg
>
> There is no other change except for the source code and a rediffed
> `patches/R.sh.in`
>
> On an unrelated note, it would be nice if tickets talking about R would
> contain "r-project" on trac since it is otherwise hopeless to search for.

New description:

 The current version of R (r-project) disables graphics if no X11 is
 available even though `r.capabilities()` states that PNG is enabled. But
 you can't generate PNGs, which is why R graphics is broken in the Sage
 virtual machine. This is fixed in the newest upstream version, of which I
 made a new spkg.

 http://www.stp.dias.ie/~vbraun/Sage/spkg/r-2.14.0.p0.spkg

 There is no other change except for the source code and a rediffed
 `patches/R.sh.in`

 On an unrelated note, it would be nice if tickets talking about R would
 contain "r-project" on trac since it is otherwise hopeless to search for.

 Apply trac_12057_fix_doctests.patch

--

Comment(by vbraun):

 Patch attached for some small changes in `sage/interfaces/r.py`.
 Highlights are that R now returns the class as ordered list and that it
 doesn't accept the somewhat spurious 'source(file=file(...))' construct
 that we feed it.

-- 
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/12057#comment:8>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica, 
and MATLAB

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