#12155: Bug when taking complement of bipartite graph.
----------------------------+-----------------------------------------------
   Reporter:  fidelbarrera  |          Owner:  jason, ncohen, rlm   
       Type:  defect        |         Status:  needs_work           
   Priority:  major         |      Milestone:  sage-5.0             
  Component:  graph theory  |       Keywords:  bipartite, complement
Work_issues:                |       Upstream:  N/A                  
   Reviewer:                |         Author:                       
     Merged:                |   Dependencies:                       
----------------------------+-----------------------------------------------
Changes (by rbeezer):

  * status:  needs_review => needs_work


Comment:

 I got two errors on 4.8.alpha3.  Error messages ({{{print "Error!"}}})
 could be cleaned-up in the first.

 {{{
 rob@lava:/sage/sage-4.8.alpha3/devel/sage$ ../../sage -t devel/sage-
 main/sage/graphs/graph.py
 sage -t  "devel/sage-main/sage/graphs/graph.py"
 **********************************************************************
 File "/sage/sage-4.8.alpha3/devel/sage-main/sage/graphs/graph.py", line
 1475:
     sage: if not g.is_forest():
          cycle = g.is_even_hole_free(certificate = True)
          if cycle.order() % Integer(2) == Integer(1):
              print "Error !"
          if not cycle.is_isomorphic(
                 graphs.CycleGraph(cycle.order())):
              print "Error !"
 Exception raised:
     Traceback (most recent call last):
       File "/sage/sage-4.8.alpha3/local/bin/ncadoctest.py", line 1231, in
 run_one_test
         self.run_one_example(test, example, filename, compileflags)
       File "/sage/sage-4.8.alpha3/local/bin/sagedoctest.py", line 38, in
 run_one_example
         OrigDocTestRunner.run_one_example(self, test, example, filename,
 compileflags)
       File "/sage/sage-4.8.alpha3/local/bin/ncadoctest.py", line 1172, in
 run_one_example
         compileflags, 1) in test.globs
       File "<doctest __main__.example_6[8]>", line 2, in <module>
         cycle = g.is_even_hole_free(certificate = True)
       File "/sage/sage-4.8.alpha3/local/lib/python/site-
 packages/sage/graphs/graph.py", line 1528, in is_even_hole_free
         subgraph =
 self.subgraph_search(GraphGenerators().CycleGraph(start), induced = True)
       File "/sage/sage-4.8.alpha3/local/lib/python/site-
 packages/sage/graphs/generic_graph.py", line 9444, in subgraph_search
         return self.subgraph(g)
       File "/sage/sage-4.8.alpha3/local/lib/python/site-
 packages/sage/graphs/generic_graph.py", line 9071, in subgraph
         edge_property=edge_property)
       File "/sage/sage-4.8.alpha3/local/lib/python/site-
 packages/sage/graphs/generic_graph.py", line 9328, in
 _subgraph_by_deleting
         G = self.copy()
       File "/sage/sage-4.8.alpha3/local/lib/python/site-
 packages/sage/graphs/generic_graph.py", line 472, in __copy__
         G = self.__class__(self, name=self.name(), pos=copy(self._pos),
 boundary=copy(self._boundary), implementation=implementation,
 sparse=sparse)
       File "/sage/sage-4.8.alpha3/local/lib/python/site-
 packages/sage/graphs/graph.py", line 1085, in __init__
         pos = data.get_pos().copy()
     AttributeError: 'list' object has no attribute 'copy'
 **********************************************************************
 File "/sage/sage-4.8.alpha3/devel/sage-main/sage/graphs/graph.py", line
 1500:
     sage: all( t(graphs.RandomBipartite(10,10,.5)) for i in range(100) )
 Exception raised:
     Traceback (most recent call last):
       File "/sage/sage-4.8.alpha3/local/bin/ncadoctest.py", line 1231, in
 run_one_test
         self.run_one_example(test, example, filename, compileflags)
       File "/sage/sage-4.8.alpha3/local/bin/sagedoctest.py", line 38, in
 run_one_example
         OrigDocTestRunner.run_one_example(self, test, example, filename,
 compileflags)
       File "/sage/sage-4.8.alpha3/local/bin/ncadoctest.py", line 1172, in
 run_one_example
         compileflags, 1) in test.globs
       File "<doctest __main__.example_6[14]>", line 1, in <module>
         all(
 t(graphs.RandomBipartite(Integer(10),Integer(10),RealNumber('.5'))) for i
 in range(Integer(100)) )###line 1500:
     sage: all( t(graphs.RandomBipartite(10,10,.5)) for i in range(100) )
       File "<doctest __main__.example_6[14]>", line 1, in <genexpr>
         all(
 t(graphs.RandomBipartite(Integer(10),Integer(10),RealNumber('.5'))) for i
 in range(Integer(100)) )###line 1500:
     sage: all( t(graphs.RandomBipartite(10,10,.5)) for i in range(100) )
       File "<doctest __main__.example_6[13]>", line 1, in <lambda>
         t = lambda x : (Graph(x).is_forest() or###line 1498:
     sage: t = lambda x : (Graph(x).is_forest() or
       File "/sage/sage-4.8.alpha3/local/lib/python/site-
 packages/sage/graphs/graph.py", line 1085, in __init__
         pos = data.get_pos().copy()
     AttributeError: 'list' object has no attribute 'copy'
 **********************************************************************
 1 items had failures:
    2 of  16 in __main__.example_6
 ***Test Failed*** 2 failures.
 For whitespace errors, see the file /home/rob/.sage//tmp/graph_18917.py
          [12.0 s]
 }}}

-- 
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/12155#comment:5>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica, 
and MATLAB

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