Hi Louis,
Same here. It seems to use twice what you would expect from the settings.
Colin
On 11 June 2014 20:16, Louis Letourneau <louis.letourn...@mail.mcgill.ca>
wrote:
> Hello,
>
> When I use samtools 0.1.19 multithreaded sort
>
> samtools sort -@ 3 -m 5000M
>
> I expect the process to use between 15-20Gb (I don't know if it's 3 worker
> threads plus a main thread or not...)
>
>
> But often the process climbs up to 30Gbm which is almost twice what's
> expected!
>
> Any ideas why?
>
> Have others have had this issue?
>
> Thanks
> Louis
>
>
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HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions
Find What Matters Most in Your Big Data with HPCC Systems
Open Source. Fast. Scalable. Simple. Ideal for Dirty Data.
Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
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