Hi Pap,
Looks like a bug in 0.1.18 - any value above 0.5 results in 0 reads. The latest version of samtools, 0.1.19, seems to be fine. Cheers, Chris On 22/06/2014 01:37, "Dror Hibsh" <dro...@gmail.com> wrote: >my samttols version is: 0.1.18 (r982:295) > > >On Sun, Jun 22, 2014 at 3:36 AM, Dror Hibsh ><dro...@gmail.com> wrote: > >Hi, >I am trying to use the "-s" options on the following.. > > >This is my output for example: >samtools view 1.bam 1:50000000-50001000 | wc -l >385 > > >samtools view -s 0.5 1.bam 1:50000000-50001000 | wc -l >192 > > > >samtools view -s 0.95 1.bam 1:50000000-50001000 | wc -l >0 > > > >Do you know why?? > > >Thanks, >Pap >-- >----------------- >Dror Hibsh >0507-669599 >------------------ > > > > > > > > > >-- >----------------- >Dror Hibsh >0507-669599 >------------------ > > The University of Dundee is a registered Scottish Charity, No: SC015096 ------------------------------------------------------------------------------ HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions Find What Matters Most in Your Big Data with HPCC Systems Open Source. Fast. Scalable. Simple. Ideal for Dirty Data. Leverages Graph Analysis for Fast Processing & Easy Data Exploration http://p.sf.net/sfu/hpccsystems _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
