It looks like the version I had installed was 0.1.9. I was misreading it as 19. Have upgraded and it works just fine. Thanks!
-----Original Message----- From: Devon Ryan [mailto:dprya...@gmail.com] On Behalf Of Devon Ryan Sent: Friday, July 04, 2014 3:31 AM To: Baker, Daniel N. Cc: samtools-help@lists.sourceforge.net Subject: Re: [Samtools-help] Samtools view options not in v0.1.19? They're still there, just type "samtools view" for the full list. ____________________________________________ Devon Ryan, Ph.D. Email: dpr...@dpryan.com Tel: +49 (0)178 298-6067 Molecular and Cellular Cognition Lab German Centre for Neurodegenerative Diseases (DZNE) Ludwig-Erhard-Allee 2 53175 Bonn, Germany On Jul 3, 2014, at 9:30 PM, Baker, Daniel N. wrote: > Good afternoon: > > Were the "-L" and "-c" options deliberately removed from the most recent > edition of samtools? If so, why? They seem to be useful enough tools which > work pretty well. I've been able to get to them by rewinding to v0.1.17 and > v.0.1.18. I'm mostly just curious. > > Thanks, > > Daniel Baker > Bioinformatics Analyst > ARUP Laboratories > > > ------------------------------------------------------------------- > The information transmitted by this e-mail and any included > attachments are from ARUP Laboratories and are intended only for the > recipient. The information contained in this message is confidential > and may constitute inside or non-public information under > international, federal, or state securities laws, or protected health > information and is intended only for the use of the recipient. > Unauthorized forwarding, printing, copying, distributing, or use of > such information is strictly prohibited and may be unlawful. If you > are not the intended recipient, please promptly delete this e-mail and > notify the sender of the delivery error or you may call ARUP > Laboratories Compliance Hot Line in Salt Lake City, Utah USA at (+1 > (800) 522-2787 ext. 2100 > > ---------------------------------------------------------------------- > -------- Open source business process management suite built on Java > and Eclipse Turn processes into business applications with Bonita BPM > Community Edition Quickly connect people, data, and systems into > organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards > http://p.sf.net/sfu/Bonitasoft________________________________________ > _______ > Samtools-help mailing list > Samtools-help@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/samtools-help ------------------------------------------------------------------- The information transmitted by this e-mail and any included attachments are from ARUP Laboratories and are intended only for the recipient. The information contained in this message is confidential and may constitute inside or non-public information under international, federal, or state securities laws, or protected health information and is intended only for the use of the recipient. Unauthorized forwarding, printing, copying, distributing, or use of such information is strictly prohibited and may be unlawful. If you are not the intended recipient, please promptly delete this e-mail and notify the sender of the delivery error or you may call ARUP Laboratories Compliance Hot Line in Salt Lake City, Utah USA at (+1 (800) 522-2787 ext. 2100 ------------------------------------------------------------------------------ Open source business process management suite built on Java and Eclipse Turn processes into business applications with Bonita BPM Community Edition Quickly connect people, data, and systems into organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards http://p.sf.net/sfu/Bonitasoft _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
