Hello all, I am trying to follow the http://samtools.sourceforge.net/mpileup.shtml tutorial and I’m getting errors with the newest version of the software. It appears that bcftools has removed the options [bvcg] in the view section. Can the tutorial please be updated?
I really just need to know how to create a consensus sequence of a region that contains SNPS. Any help would be great. Every online resource I’ve found on the topic isn’t working because of these changes in bcftools. - Todd ------------------------------------------------------------------------------ _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
