Picard release 1.123
20 October 2014
- Updates to "GenotypeConcordance" Command Line Program
-- Update the genotype concordance scheme to have called variants that
are filtered be counted as though they are missing
-- Improvement to handle 'mismatching' ref alleles for indel
comparison conditions.
-- Changed default extension of metrics files
- Improvements to htsjdk testing
-- Cleanups regarding temporary files in tests
-- Delete index files for temp files at the end of testing, and
do not write temp files within source directory.
- George
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