On 19 Nov 2014, at 17:47, Peter Cock <p.j.a.c...@googlemail.com> wrote: > I have no idea what 'minQLen' was short for, unless the Q > was a typo?
It would be Minimum Query Length, where query is a synonym for read (imagine you were an aligner being asked to map a read...). This is also what SAM/BAM's QNAME field stands for, as both read and reference start with R... > My proposed change to samtools is here: > https://github.com/samtools/samtools/pull/321 Thanks, I've applied this (after modifying it a little). John -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
