Hi John,
The output file wasn't created because, as the error message stated, you
need to specify an output name prefix:
samtools sort Nr32.bam Nr32.sorted
Best,
Devon
--
Devon Ryan, Ph.D.
Email: dpr...@dpryan.com
Laboratory for Molecular and Cellular Cognition
German Centre for Neurodegenerative Diseases (DZNE)
Ludwig-Erhard-Allee 2
53175 Bonn
Germany
<devon.r...@dzne.de>
On Tue, Nov 25, 2014 at 9:28 AM, john@home <john.groenend...@upcmail.nl>
wrote:
> > Hi
>
> >
>
> > I use the command >samtools index filename.bam and nothing happens
>
> >
>
> > >samtools sort Nr32.bam
>
> > Usage samtools sort [-on] [-m <maxMem>] <in.bam> <out.prefix>
>
> >
>
> > The file is exported from CLC in bam format. The file Nr32.sorted.bam is
> not created.
>
> >
>
> > Do you know what could be wromg?
>
> > Thanks!
>
> >
>
> > Kind regards,
>
>
>
>
>
>
>
>
>
>
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