The documentation is misleading, -f is not required in this case. cheers, petr
On Thu, 2014-12-04 at 10:49 +0100, Rasmus Borup Hansen wrote: > Hi! I intend to use "bcftools norm -m -" to split multiallelic sites > into multiple rows, and this is the only normalisation I'm interested > in for now. It appears to work, but the documentation says that "-f > ref.fa" is mandatory. Can I assume that my command will continue to > work without specifying the reference? > > > Best, > > > Rasmus > > Intomics is a contract research organization specialized in deriving > core biological insight from large scale data. We help our clients in > the pharmaceutical industry develop tomorrow's medicines better, > faster, and cheaper through optimized use of biomedical data. > ----------------------------------------------------------------- > Hansen, Rasmus Borup Intomics - from data to biology > System Administrator Diplomvej 377 > Scientific Programmer DK-2800 Kgs. Lyngby > Denmark > E: r...@intomics.com W: http://www.intomics.com/ > P: +45 5167 7972 P: +45 8880 7979 > > ------------------------------------------------------------------------------ > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk > _______________________________________________ > Samtools-help mailing list > Samtools-help@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/samtools-help -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
