>From http://samtools.github.io/bcftools/
The most up to date version of BCFtools and SAMtools can be obtain from
github using these commands:
- git clone --branch=develop git://github.com/samtools/htslib.git
- git clone --branch=develop git://github.com/samtools/bcftools.git
- git clone --branch=develop git://github.com/samtools/samtools.git
- cd bcftools; make
- cd ../samtools; make
The *clone* command above is used to create a local copy of the remote
repository and needs to be run only once. Whenever the latest snapshot from
github is needed, use instead the *pull* command:
- cd htslib; git pull
- cd ../bcftools; git pull
- make clean
- make
- cd ../samtools; git pull
- make
The ver you are talking about 0.1.19 is something I like to call last
gen... from 0.1.19 to 1.0 there was a major leap, lots of changes.
Adrian
On Wed, Dec 17, 2014 at 11:10 PM, Lana Schaffer <schaf...@scripps.edu>
wrote:
>
> I have found bcftools in samtools 0.1.19 but not in samtools 1.0.
>
> Is that correct?
>
>
>
> Lana Schaffer
>
> The Scripps Research Institute
>
> Biostatistics, Informatics
>
> DNA Array Core Facility
>
> 858-784-2263
>
>
>
>
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