Hi all,

We have an amplicon pipeline that uses mpileup output.  We recently updated 
samtools from 0.1.19 to 1.1.  When performing some validation on the pipeline, 
we found that there were a significant number of variants missing from the 
caller(Varscan 2.3.7) output. The only difference was the output from mpileup.  

In the version 1.1, the coverage is greatly reduced and the base quality string 
is the same upto approx the middle (base quality string position ~1138); after 
that everything appears to be garbled. I’ve included outputs for one position, 
but it is pretty much the same for most positions.  (see outputs below)

I used the same command is for both versions:   samtools mpileup -B -f 
/local/scratch/REFERENCE_DATA/GATK_Bundle/b37/human_g1k_v37_decoy.fasta -r 
13:32911471-32911471 Sample.bam

I’ve searched for an answer to the differences, but couldn’t find an 
explanation of why the outputs of v1.1 would be reduced and changed compared to 
0.1.19.   If there is an option to get similar output to v0.1.19, that would be 
great.  Or, if it’s a bug it would need to be fixed. 

Any help or a point in the right direction would be appreciated. 

Thanks,

Paul

Paul Lott
UC Davis Genome Center
University of California, Davis


Using samtools 0.1.19, we get the following output:

[mpileup] 1 samples in 1 input files
<mpileup> Set max per-file depth to 8000
13      32911471        G       3656    
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,..AA.....AAAAA.A.A.A.A.AAAA.AAA.A.AAA...AAAAAA..A..AAA.AA.AAA.A.A.A.AA..A....A.A.........A..A.A...A...AAA...AAA.....AA.....A.A.AA...A.A.A..AAAAAA...A.AA..A...AA..A....A.A.A..AAAA..AAA.A....A...A.A..AA..A.A..AA..A....A.AAA.....A..A....AAA..A.AAAAA..........A..AAA..A...A..AAAAA..A......A....A..AA...A.AAA.A....A..AAAAA.A.AA.AA....AA.A.A..A.AA..AA..A....AA.AAAAAA.....A.AAA.AA.AA.A..AAAAA...A.......AA..A.AAA...A.....A.....AAAA..A...AA.A...A..AA..A..AA..A.A..A..AA..AAA.AAA.....AAAAAAA.A.A.A...AA..A......AAAA.AAA.A.A..AAA.......AAA..A.AA..AAA..A...A.A...AA.AA...AA..A.A...A...A.AA.A..AA.AAAA.AA.AAAA...AA..AAAA.A...AA.....AA...A....A.A..A.A.A.AAA.AA.A........AAAA.A.AA.AA..AA..AAA..A..A.A.......A..AA.A...A..AAAA..AA.A..A.A...A.A...A......AA..A.A...A......AAA.A.A..A....AA..AAA.AAA.A.A...AA..AA..A.AA..AA.AAA..AA...AAAAAA.A.A......A....A.A.AA..A...A...A.A..A.A..AA...A....A.....AA.A..AA....A.A..AA.A.AA......A.AA..A.AAAAAAAA....AA..A.A..AAAAA.A.A...A.A..A....A..AA..AAAAA..AAAAA.A.A...A..A..A.A....AA.AA..A..A...A..A.AAAA.A.......A.A...A..A....AAAAA.AAAA....A.....AA....A.AAAA...A.A...AA....AAAA..AA....AAAA.A.....AAA.A.A.AA.A.AA....A.AA.AA...A.A............A...AA..AA..AA..AA...A..A..A..A.A.....AA...A..A.A..AAA.A.A.A..A....AA.A..AA..A....A...A.A...AAAA.A.A.AA.AAAAAA...AA.....AAA.AA.,.A.,,,,,,,,,,,,,,,,,,,,,aa,,,,a,,,aa,aa,aa,,,,,,,,a,a,,a,,,aaa,a,,,,,,a,,a,,aaa,a,a,a,aaa,aa,,aaa,,,aaaa,,a,,aaa,aaaa,a,a,a,aa,,a,aa,,,,,aa,a,,a,,,aaa,,aa,,,,,aa,,,aa,a,a,a,a,aa,,,aa,,a,,,,,a,,,a,,aaa,aaa,,a,,a,,a,a,a,aa,,,,a,aa,,,,a,,,,aaa,aaa,,,,,,,,a,,aa,,a,,,aaaaa,,a,,,,,,a,,aa,,,,aa,,,,,,aaa,a,a,aaa,,,,aa,a,,a,aa,,a,,a,,,aa,,,,aaaa,aa,aa,a,,aaaaa,,,,,aa,a,aaa,,a,,a,,,,aaaa,,,,aa,,,,a,,aa,a,,aa,,a,aa,,aa,,aaa,aaa,,,,aaaa,a,,a,,,aa,,,,,,aaa,aaa,,,aa,,,,,,aa,a,a,aa,,aaa,,a,,aa,,,aa,aa,,,a,,,aa,a,,,,aaa,aaaaa,a,aaa,,,aa,,aaa,a,,,a,,,,a,,a,,,,a,,aa,aa,aa,a,,,,,,a,aaaa,a,aa,a,aa,,,,aaa,a,aa,a,,a,,,a,a,,,,a,,,,,,a,,,,,,a,,,aa,a,,a,,,aa,,aaaa,a,a,,a,a,,a,aa,,aa,a,,aa,aaaa,,,,,,,,,a,,aa,,,a,a,,aa,a,,,,,,a,,,,,aa,,a,a,,aa,aa,,,,,a,,a,aaa,,a,a,a,,aaaa,a,,,a,,,a,,,a,,,,aaa,aaaa,a,a,aa,a,,,aa,aa,,,a,,aaaa,a,,,,,,a,,,,,a,,,aa,,,,,,aa,,,,aaaaa,a,a,,,,,aa,aa,,,aa,a,aa,a,a,aa,a,aa,,a,aaa,,,,,,,a,,aa,,aa,,aa,,a,,,a,a,a,,,,aa,,a,,a,a,,aaa,aaa,a,,aaa,,aa,,a,,,,a,aa,aaaa,a,aaaaaa,a,,,,aaa,a,,,aa,a,a,a,,a,a,,,a,,,,,,a,,,,,aaa,a,,,,a,,,,a,,,,aa,,,,,a,t,a,,,,a,,aaaa,,aaa,a,,,,a,,a,a,,,a,a,a,a,aa,,aa,aa,aaaa,aa,,,aaa,aaa,,,a,aa,,,aaaa,,a,,a,,a,,,,a,a,a,a,,,,,a,,aaa,,,,a,,a,aa,,,a,,,,,a,,,,,a,aa,aaaaa,a,,a,,,,,,,,,,,,,,aa,a,a,a,,
   
GGGGGGGGGGGEGGGGGGGGGGGGGGGGGGGGGGG<GGGGGGG<GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGFGFGFGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGEGGGGGEGGGGGFEGGGFGGGGFGGGFGGGG<GGGGGGGGGGGGEGGFGGGGGGFGGGGGGGGFGGGGGGGGGGGFGGGGGCGGGGGGGGGGGGFGGFFGGGGFGGGGGFGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGFGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGFGGGGGGEGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGFGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGEGGGGGGGGFGGGGGGGGGGGGGGGGGGGEGFGGGGGGGFGGGGGGGGGGGGGGGGGFGGGGDGGGGGGGGGGGG@GGGGGGGGGGGGGGGGGFFGGGGGGEGGGGGGGGGGGGGGCFGGCGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGFFGGGGFGGFGGEGGGGGGGGGGAEFFGFGGC<FGGGDDGGEGGGGGGGDFG8GGGGGGGGGGGGGFGGGGGFGGGGGGFFEGGGEGG@F8FGGGGCFGGFGGGFGGGFFFG8GEFGGGGGCGGGGGFGFGGGGGFGGGCGGGGGG@@FDGGGEGECGGGC8GGGCG<FFFGGGGAGGFGGGGFGGGGGFCGGGGGGGGGFGDGGGGEGGFFFEGGGFC@GGGG8GGG8GDFGEFGGFGGFGGF8GGGGFGGGGAFGEGEFGCFFFCCGDGGGGEGFGFGG?GGGFFGC8FGDGGDFFC8GFGC<GEFFG<GC8GG@GFFDGGFF88G<F@FGGGGF@GF<GFFFGGFFD<E@G8GGGGGGEGFGGGGGGGGCGGGGGGGGGGGGGGGGGGAGGFGGGDGGGGGGGGGGGGGGGGGGGEGGAGGGGGGGGGGFGGG9FGGGGG@CG@GGEGGGGGGGGGGGECGGGDGGGGGGGGGGGGFGGGGGFFGGGGBGGGGGGGGGGGGFGGGGGG<GGGGGGGG?GGGGGEGFGGGDG9GGFGGGGGGGGDGGFGGGGGGGGGGGCGGGGGGGGGFGDGG@GGGGGGFGGCGGEGGFFDGGG<GGGGGGGGCGGF<GGGFGGFGGGGGGGGGFGGFFGGGGFGGGGGGCGGEGGGGGGGGGGGGDEGGGGGGFCGGGGGGGGGGFGGGGGGFGGGGGGDGGFGGGGFF9FE9FGGGGFFFGGGGCFGGFGFGGGDGGGGFGGGGGGGGGGGGGGG5GGGGGGAGEGG8GGGGGGGGFGGCGGGGGGGGGGGGFGGFGGGEGGFGGGGGGGFGGGGGGGGGGDGGGGGGGGGGGGGGGGGEGGG<DGGGGGGGGGGGDGGGGGFGGFG9GGGGGGGAGGGGGGFFEGGGGGGGGGGGCGFGG<G9GGGGGGGGGCGGGGGGGGGGGGG9CFGGGGFGGGFGGFGGEGFGGGGFGFGGG<GGGGGGG9<FDGGGFGGFGGGGGGGGGGGGGEGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG<FGEGGGGFGDGGGGGAGAGGCG9FGGGGG<F<GGGFGGGGGFGGGGGAGGCGGGGGGGGGGG@GCGGGGDGGF9GGFGGGGGGFGGGGGCGGGFGGGGCGF<GGFGGGGGGGGEGDFGGGGGGGFGFGFGGGGGGGGGGGGGGGFAGGGGGGFGGGGGGCFGGGFGGGGGFGFE<GGGGGGGGG9FGGGGFGFFGGGGGG<FGFFGGCGGEGGGGGCGGFG@GGGFFGGGGGFGGGGGFGGGFGGGGFCGGGGGGGGGGGGGGGGFGGGDGGGFGGGGGGG@GGGFGGGGGFGGFGGFGFGFFGGGGGGGGGGGGEGGGGGGGG?GDGFGFGGCG9GGGGGGGFGGGC9GFGGFGGGGGGGGGGGAGGCGGGGGGCG9FGGGGGFFGGFG<GFGAGFFCGGG@GGGGFGCFGGGGGGFGGGGGGGGCGGGGGGGG9FGDEGGG9GGG9GGGG?GGFGFGGGGGGGGGGFGGGGGGGGGDAGFGGGGGGFFGGGFGGGGG?DGGCGGGGGGGGGGGGGGGDGG9FGEGGGGGGGFGGGGGGG<GGGGGGGGGDGAGGGFGGGFAGFGGGFGGGGFDGGGGGGGGGGGDGGFG9G=GGGGGGGGFGGGGGGGGGGGGGGGGFCF9FGGCFGCFGG8FFFCGCGCDG<FFGGFGFFGFGGGCCGGEFECFGGGGDGGGGGDCCGFGGGEFGFGGGFGGGFCGCGDD8GGGFGGF8FFGGFGGF=DGGGCFGFGGFGGG8GGGFGGGGGGGCGGFFGGFFDGG8GGG6FGDGFGEGCEGGGGFGDGGGG8GGG8GGEGGGGGGGFFGGGCDFGFFGGGGGFDGGGGGFFG8FGGFDGGGGGGEGGGG@8DGFGGGF8GGGGFGGGGDDFEGGGGGGGGGGGFGG8GDFGGGGGFEGFGGCGGGGGGGGFFG?GG=?G=GGGGGCGGGGFFGFGGGGFGG?GFGGFGGFGDF8FFGGGFFGGFGGDDFG?FGGGGGFGGGGE8G8GGGFGGDEFGGGFGGGFGGGGFFFDGGGGDEFGGGGGGFGFDFFF@GGGGGGGGFCGGGGGG8FFDGGDGF8GGCGGGGGFGDGGG8GGGCGGCD=GGGG8GGGGGFGGGCFCGEFGGG=GGGFGGGGFGGFGGGDGGGG=FG@DGDGG?FCFGG8GGGFGCF8GDFGF8B@GEF@GEGFGDGGGFGGGEFGFGFGCGFGGFGGFFFGGGGGGFG=CCFGGFGEGFGGFFGGGFFEGFGFGGDGG?GGGFGGDGDGFGGDGGGGGGGGGFFCGGGG=GGGFGFFFFGGGDGCGFGGGGGGF8GGGGEGGFGGDGGFGGF8GGFF?GGGFFGFGGGGGGGGGG=GFGGGGGFFGDGCGGFGG8GGGGDCFGGGGFGGGGGFGGG8G8CGGFGFGGFGDGFGGGGGG8G8G8GG8DGFGGFFFGDCGFGBG@GG8GGGFGGGGGGGGFFGFFFGGGFGGDGFG8FGFGGGG@G8DFGGEGGGFGGFGCFGGGGGGFG@GGGFDGGEDGGGEGEGFFF=GFGC?GGG8GGGGGCFDG=GGGGGGGGGGGGFGGGGGGGCGGGEF8FGFF=GFFGG8GGGFDGGFFDGGFFGGGFG>GGGFFFG8GGGFFGGFG8FG?GGGFG=GGFGGGGGGGDGGCGFFGD<DGFGGGFGG=GGGGGG8GGGGGGGGDGFG?=FGGG@GGFGFFGGC8GFGFGDGF8GFGBGE8FFFG8@?GGFEGG?F@GD@=8FFDG8G=GF=8F@FFDG8GGF8G=G88GE=G@C8@@GDFFGDGGGFGF?DCG@=G8?DGGGGDFDFG8G@?@GFDFGDEFGGDDCFGG6FFGG?FG=GD=GG8DFFCGFDG@@8=8B@F8CGG=GDGDGC@DGFG8EGG@CDFDF6G8GF




Using Samtools 1.1, we get the following output:

13      32911471        G       2474    
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,..AA.....AAAAA.A.A.A.A.AAAA.AAA.A.AAA...AAAAAA..A..AAA.AA.AAA.A.A.A.AA..A....A.A.........A..A.A...A...AAA...AAA.....AA.....A.A.AA...A.A.A..AAAAAA...A.AA...A...AA..A...A.A.A..AAAA..AAA.A....A...A.A..AA..A.A..AA..A....A.AAA.....A..A....AAA..AAAAAA..........A..AAA..A...A..AAAAA..A......A....A..AA...A.AAA.A....A..AAAA.A.AA.AA....AA.A.A..A.AA..AA..A....AA.AAAAAA.....A.AAA.AA.AA.A..AAAAA...A.......AA..A.AAA...A.....A.....AAAA..A...AA.A...A..AA..A..AA..A.A..A..AA..AAA.AAA.....AAAAAAA.A.A.A...AA..A......AAAA.AAA.A.A..AAA.......AAA..A.AA..AAA..A...A.A...AA.AA...AA...AA...A...A.AA.A..AA.AAAA.AA.AAAA...AA..AAAA.A...AA.....AA...A....A.A..A.A.A.AAA.AA.A........AAAA.A.AA.AA..AA..AAA..A..A.A.......A..AA.A...A..AAAA..AA.A..A.A...A.A...A......AA..A.A...A......AAA.A.A..A....AA..AAA.AAA.A.A...AA..AA..A.AA..AA.AAA..AA...AAAAAA.A.A......A....A.A.AA..A...A...A.A..A.A..AA...A....A.....AA.A..AA....A.A..AA.A.AA......A.AA..A.AAAAAAAA....AA..A.A..AAAAA.A.A...A.A..A....A..AA..AAAAA..AAAAA.A.A...A..A..A.A....AA.AA..A..A...A..A.AAAA.A.......A.A...A..A....AAAAA.AAAA....A.....AA....A.AAAAA...A.A...AA....AAAA..AA....AAAA.A.....AAA.A.A.AA.A.AA....A.AA.AA...A.A...........A...AA..AA..AA..AA...A..A..A..A.A.....AA...A..A.A..AAA.A.A.A..A....AA.A..AA..A....A...A.A...AAAA.A.A.AA.AAAAAA...AA.....AAA.AA..A.,,,,,,,,,,,,,,,,,,,,aa,,aa,a,aaa,,,aaa,aa,,a,a
 
GGGGGGGGGGGEGGGGGGGGGGGGGGGGGGGGGGG<GGGGGGG<GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGFGFGFGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGEGGGGGEGGGGGFEGGGFGGGGFGGGFGGGG<GGGGGGGGGGGGEGGFGGGGGGFGGGGGGGGFGGGGGGGGGGGFGGGGGCGGGGGGGGGGGGFGGFFGGGGFGGGGGFGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGFGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGFGGGGGGEGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGFGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGEGGGGGGGGFGGGGGGGGGGGGGGGGGGGEGFGGGGGGGFGGGGGGGGGGGGGGGGGFGGGGDGGGGGGGGGGGG@GGGGGGGGGGGGGGGGGFFGGGGGGEGGGGGGGGGGGGGGCFGGCGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGFFGGGGFGGFGGEGGGGGGGGGGAEFFGFGGC<FGGGDDGGEGGGGGGGDFG8GGGGGGGGGGGGGFGGGGGFGGGGGGFFEGGGEGG@F8FGGGGCFGGFGGGFGGGFFFG8GEFGGGGGCGGGGGFGFGGGGGFGGGCGGGGGG@@FDGGGEGECGGGC8GGGCG<FFFGGGGAGGFGGGGFGGGGGFCGGGGGGGGGFGDGGGGEGGFFFEGGGFC@GGGG8GGG8GDFGEFGGFGGFGGF8GGGGFGGGGAFGEGEFGCFFFCCGDGGGGEGFGFGG?GGGFFGC8FGDGGDFFC8GFGC<GEFFG<GC8GG@GFFDGGFF88G<F@FGGGGF@GF<GFFFGGFFD<E@G8GmmmmmjiFmlimmmjjX^fmmmlmml^lmllemmldmlllcjjmmilmml^mmlmmm^mmmlEmmAmmmmmimmlllmmmWklRjmmdZmfmmhmjm\lmjmilmiiikmjGmmclmjmmmm^lmmjm^dlmGkmemmmmmmmmlcmillmmmil<GRmmllmml[mmmjjjFmmmDm_mlFlmm^GmmjDllejmGmmmmmmmRgmmmmmlf^jlkDlm^mml^RmlmmhlmklGllij^jbmGlmmm^fmmlbmmmlmllmm^mjlmmmlmlFllkmllmimfmmikikmmmmmllmemml`PefmmcmlimmmimGmmmklRmmmmllmmemGOlmllmmlli9k\^kmmmmFQlimllNbmmkmFmRjglmellmmmmlmmmmk^mmmc[m^mmjmfmkmj\lmmmlmmmkmmflmmmmmllljmmimmljklhmmlmmmlmmlilllfmmmmmGjmmmlimmmmmm^lljmmkjmlaim^mmimlmmmmimjjmRlmm]m_^mimmij]mmmGmmlFPmmmmmlfmmilCilklbm_cmmmlmmmmCmlmmlmmmjmmmmP_Qlfj^lmjmleRkil\mkm^mmlmllmiSl^mjhlm^Sgcmkl>fmjmlmGjmmimlmRmEmklilmlm^^imm?mlmmlfmmlllmRGmmmmml6FfkRmcidiilmmmlgmAkmilNlmmllm<l<mmfFmllmk>mll^mfmGCmmelmmmmlmm@mfjmlmbmGF\mmFmGmmmjlRmmllemmmemmlm_mi^mmkmmllllmmkjfbmjimlmmlmkmFmmll^mmmmkmmlmmFAjmmlmmhmll^mmikclldmimmllll\blmmmmmmmm^FmmmllmFQcmlmmm<lfllmkhlmhmmmimiRRFGemm^llmmmmjhlmmmmjlmklmmmm]hilmmm^mm^kl?ilGmljllgmlmllmmjmll@mmmlmm^mR]mGFmm]jlllFmmGllljmlmjiklmhmfmmjJmjmli]mmhm^mmmmmmmllllh^mFilklmlmmfmlmmjgmli^m^lmlhm_lGmfmkkFmmlfSjQlAmll_kmm@mlmmkmeFlmmRmmmdmmlmfmlmCmmmjljGm_lkfhmm^_mkm]mmcfellblbmlmiemmm^mlm^mmmRimGDflljjljmmbkmmlmmmmmejmmimlmmmmmmmiGmmmkjllXk^klml^mlclmllmmm^bmmljmmlljjmfllllmmmlblFdmmlmllll[mmmllmjfmGlj^l]lUmbeGmmRmmllcmmlmiRmGmGmmmmjFCF^kmbFGCFGG8FFFCGCGCDG<FFGDFGEF8GDD8FGF<=F8DFFGGGDG8
------------------------------------------------------------------------------
Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help

Reply via email to