Hi, I was trying to call snp and micro-indels using the method of samtools and
bcftools. The output should contain the mutations and the number of reads
matching the reference and variant allele.
Here is an example:
Chr | Position | Mutation | Reference | Varaint
1 | 1057893 | C->T | 578 | 140 |
2 | 1178904 | A->T | 543 | 365 |
3 | 1234503 | G->C | 475 | 872 |
I did not how to get it. I am a new guy in this area of research. Could anyone
help me ? Thank a lot!
Yizi
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