Hi all, We have some old legacy scripts that rely on the old pileup format: ... 1 180934047 T 5 cccCc @JG>F 1 180934163 A 5 gGgGG GHJFF 1 180938117 G 4 .,.. JBJA ...
Is there a way to get this, or something similar, using contemporary tools? We're starting to find that the really old versions of samtools (pre-0.1.14) that have this output don't necessarily play well with recently created bams (sambamba, BWA mem, hg38, etc.) thanks, Richard -- The contents of this electronic mail transmission are intended to be CONFIDENTIAL and for the sole use of the designated recipient. If this message has been misdirected, please contact the sender as soon as possible. ------------------------------------------------------------------------------ _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
