When trying compile the new release, I get the following error
$ gcc -pthread -rdynamic -o samtools bam_index.o bam_plcmd.o sam_view.o
bam_cat.o bam_md.o bam_reheader.o bam_sort.o bedidx.o kprobaln.o bam_rmdup.o
bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o
bam2bcf_indel.o errmod.o sample.o sam_opts.o cut_target.o phase.o bam2depth.o
padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o
bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o
bam_quickcheck.o bam_addrprg.o libbam.a htslib-1.3/libhts.a -lcurses -lm -lz
-ldl
gcc: error: unrecognized command line option '-rdynamic'
make: *** [samtools] Error 1
$ gcc --version
gcc (MacPorts gcc48 4.8.5_0) 4.8.5
Copyright (C) 2015 Free Software Foundation, Inc.
Should I install a more recent gcc via macport?
Any help welcome.
Stephane
------------------------------------------------------------------------------
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help
