ioLinux Mint Desktop mate

samtools depth -b -q -Q -r <chrY:1-30000000> in.bamsamtools depth -b -q -Q 
-r<chrY:1-30000000> in.bam
samtools depth -q -Q -r <chrY:1-30000000> in.bam
samtools depth -q -Q -r <chrY:1-30000000> in.bam
samtools depth -Q -r <chrY:1-30000000> in.bam
samtools depth -r <chrY:1-30000000> in.bam
samtools depth <chrY:1-30000000> in.bam

bash: chrY:1-30000000: No such file or directory

samtools depth -b -q -Q -r <chrY:1-30000000> in.bam
samtools depth -Q in.bam
open: No such file or directory
Segmentation fault

samtools depth -b -q -Q in.bam
samtools depth -b in.bam
samtools depth -q in.bam
samtools depth -Q in.bam
usage and options menu

samtools depth -b -q in.bam
samtools depth -b in.bam
prints to screen

How do I get it to print to file  


 Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname 
and ISOGG YTree                                    
------------------------------------------------------------------------------
Transform Data into Opportunity.
Accelerate data analysis in your applications with
Intel Data Analytics Acceleration Library.
Click to learn more.
http://pubads.g.doubleclick.net/gampad/clk?id=278785231&iu=/4140
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help

Reply via email to