Which version of samtools is being used ? Version 1.2 offers
a command 'samtools bam2fq' but no command 'samtools fastq'.
- tom blackwell -
On Wed, 20 Apr 2016, Anne Philippi wrote:
Dear Samtools helper,
I find a bug when I used fastq option of samtools:
anne$ samtools fastq -nO input_sorted.bam -1 output_1.fastq -2
output_2.fastq
Segmentation fault
anne$
Best Regards,
Anne
--
Anne Philippi, PhD
INSERM - U958
Faculté de Médecine Paris Diderot - Site Villemin
10 avenue de Verdun
75010 Paris
Tel : +33 (0)1 57 27 85 56
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